EY757478

Overview
NameEY757478
Unique NameEY757478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.092e-21
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLY
Sbjct:   41 RLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLY 103          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLY
Sbjct:   53 RLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLY 115          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.661e-21
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.153e-20
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   14 RPARICGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 190
            R AR  GVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   39 RLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 2
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLY
Sbjct:   42 RLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLY 104          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   14 RPARICGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 190
            R AR  GVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   30 RLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.823e-18
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 2
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 199
            R AR  GVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   37 RLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of EY757478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_EUPCR2.092e-2180.95Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H4_ENTHI3.569e-2179.37Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H42_ASHGO4.661e-2180.95Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H41_BLEJA5.153e-2081.67Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_DICDI1.499e-1979.37Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H42_BLEJA1.269e-1876.67Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN4.823e-1879.03Histone H4-like protein type G OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757478 ID=EY757478; Name=EY757478; organism=Citrus sinensis; type=EST; length=393bp
TTCGTCGACCCCGCGTCCGGCTCGTATTTGCGGAGTCAAGCGTATCAGCG
GCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATATTCTTGGAGAAC
GTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGGAGAAAGACCGT
GACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGGCAGGACTCTTT
ATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTAAATGTTAATAG
ATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTTAGTAGTTTGTT
ATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTTATCTTTATATT
TGAGGCAATATAGAACTGTTTTCTTTGAAAAAAAAAAAAAAAA
back to top