EY757386

Overview
NameEY757386
Unique NameEY757386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  137 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  113 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  113 ATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  137 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  113 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:  113 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A    +QGSGW WLG + E   L +   ANQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+ W+  ++ Y
Sbjct:  118 AVSVGVQGSGWGWLGFNKEQGHLQIAACANQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVITWENVTERY 198          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM1_CAEEL (Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 52/85 (61.18%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 262
            A   A+QGSGW WLG   + K L V T ANQDPL  +A T LVPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+ + K
Sbjct:  136 ASTVAVQGSGWGWLGYCPKGKILKVATCANQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAK 218          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 262
            A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NWK  SD Y K
Sbjct:  138 AKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISDRYIK 220          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_GANMI (Superoxide dismutase [Mn], mitochondrial OS=Ganoderma microsporum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.794e-21
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 244
            A  AA+QGSGW WLGL+   KRL + TTANQDPL++     VP++G+D+WEHA+YLQY NVK DYL  IW V+N+K A
Sbjct:  118 ATTAAIQGSGWGWLGLNPATKRLEITTTANQDPLLSH----VPIIGVDIWEHAFYLQYLNVKADYLAAIWIVINFKEA 191          
The following BLAST results are available for this feature:
BLAST of EY757386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SODM_PONPY4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_PANTR4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HUMAN4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_CEBAP4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA4.663e-2258.54Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]
SODM_RABIT7.954e-2258.54Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM1_CAEEL7.954e-2261.18Superoxide dismutase [Mn] 1, mitochondrial OS=Caen... [more]
SODM_ONCVO6.733e-2155.95Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_GANMI8.794e-2160.26Superoxide dismutase [Mn], mitochondrial OS=Ganode... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-022-G05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757386 ID=EY757386; Name=EY757386; organism=Citrus sinensis; type=EST; length=603bp
CACGCGTCCGGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGC
TTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAAT
CAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTAT
AGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAG
ATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGAT
GTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGA
GTTCTTTGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGGCGAATACCCT
TGCAGCTTTTCACGCTGAAGTGACAATAAAACGATAATTTGCAACTGATG
ACAGACACCCTTTCTTTTGCAGTGAGTGTTACTTGTGTATCCCTTATGTG
ACATCCAAAATAATATTGGGGTTTATGCTCTTTTTGTATCTCACTATGTG
CACGGATCTGTGAATATGTATGATTGGGTTTCTATTTTCTATTTGTTTAA
TGGCGTAACATCATCAATGCTTTGTTCAAAAAAAAAAAAAAAAAAAAAAA
AAA
back to top