EY757386

Overview
NameEY757386
Unique NameEY757386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CHLMU (Superoxide dismutase [Mn] OS=Chlamydia muridarum GN=sodA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 241
            +  AA+QGSGW WL    + + L+++TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLKN  +++NW Y
Sbjct:  120 SSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDY 195          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   23 ALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 250
            A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+
Sbjct:  140 AVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISE 211          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   20 AALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 241
            AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW Y
Sbjct:  123 AAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDY 195          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   20 AALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+YLQY NVK DYL  IW+V+N+  A   Y
Sbjct:  117 AGIQGSGWGWLGVNPSNKRLEISTTPNQDPLLN----LVPIIGVDIWEHAFYLQYLNVKADYLNAIWSVINFDEAQRRY 191          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   23 ALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 262
            A+QGSGW WLG + +  +L +    NQDPL      L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW   S  +Q+
Sbjct:  133 AVQGSGWGWLGFNKKSGKLQLAALPNQDPLEASTG-LIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANWDDISCRFQE 211          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CHLPN (Superoxide dismutase [Mn] OS=Chlamydia pneumoniae GN=sodA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   20 AALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 262
            A +QGSGW WLG     + LV++ TANQDPL      L PLLG+DVWEHAYYLQYKNV+ DYLK    ++NW +  + + +
Sbjct:  123 AGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL-PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSE 202          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   11 AEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 229
            A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK IW V+
Sbjct:  137 AVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODF_TETPY (Superoxide dismutase [Fe] OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   20 AALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            AA+QGSGW WLG DT  K L +    NQD  + +  ++VPLL IDVWEHAYYL Y+N++P YL  +W ++NW+     Y
Sbjct:  115 AAIQGSGWGWLGYDTVSKSLRLFELGNQD--MPEWSSIVPLLTIDVWEHAYYLDYQNLRPKYLTEVWKIVNWREVEKRY 191          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   32 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 259
            GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:  125 GSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          
BLAST of EY757386 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   20 AALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 256
            A++QGSGW WL +D +   L + TTANQD +V   P    ++GID WEHAYY QY+N K +Y K IWNV+NWK A   Y
Sbjct:  142 ASIQGSGWAWLIVDKDGS-LRITTTANQDTIVKSKP----IIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215          
The following BLAST results are available for this feature:
BLAST of EY757386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SODM_CHLMU2.559e-2057.69Superoxide dismutase [Mn] OS=Chlamydia muridarum G... [more]
SODM2_CAEEL2.559e-2060.53Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_CHLTR5.700e-2060.00Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_AGABI5.700e-2055.70Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM_DROME1.075e-1852.50Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_CHLPN1.834e-1853.09Superoxide dismutase [Mn] OS=Chlamydia pneumoniae ... [more]
SODM_CAVPO1.552e-1758.90Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_TETPY2.027e-1750.63Superoxide dismutase [Fe] OS=Tetrahymena pyriformi... [more]
SODM_STACA3.458e-1750.00Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_SCHPO3.458e-1753.16Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-022-G05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757386 ID=EY757386; Name=EY757386; organism=Citrus sinensis; type=EST; length=603bp
CACGCGTCCGGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGC
TTGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAAT
CAGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTAT
AGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAG
ATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGAT
GTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGA
GTTCTTTGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGGCGAATACCCT
TGCAGCTTTTCACGCTGAAGTGACAATAAAACGATAATTTGCAACTGATG
ACAGACACCCTTTCTTTTGCAGTGAGTGTTACTTGTGTATCCCTTATGTG
ACATCCAAAATAATATTGGGGTTTATGCTCTTTTTGTATCTCACTATGTG
CACGGATCTGTGAATATGTATGATTGGGTTTCTATTTTCTATTTGTTTAA
TGGCGTAACATCATCAATGCTTTGTTCAAAAAAAAAAAAAAAAAAAAAAA
AAA
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