EY757235

Overview
NameEY757235
Unique NameEY757235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.505e-21
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+ +EEKE  L YHSEKLA+ + +L + PGT IR+ KN+R+C DCH+  K +S + NR I++RD  RFH F DG CSC D+W
Sbjct:  453 DVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.966e-21
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTT-IRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            DM+DEEK+  L  HSE+LA+ +GL+  P     I ++KNLR+C DCHSA K+IS I  R +V+RD+ RFHHF  G CSCGD W
Sbjct:  740 DMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D E+ EKE AL  HSEKLA+  G++++  G  IRV KNLRVCGDCH  AK +S +  R+IVLRD  RFH F+DG CSC  FW
Sbjct:  790 DAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.353e-21
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+ ++ KE  +  HSEK+A+ FGLL   P   I + KNLR+CGDCH  AK ISLI  R+I++RD +RFHHF DG CSC D+W
Sbjct:  527 DVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.353e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+E  +KE  L  HSEKLA+ FGL+  P  + +R++KNLR+C DCH   K  S+   R I++RDV RFHHF DG CSCGDFW
Sbjct:  554 DVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.380e-21
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 2
Query:    8 SALVHHGDMEDEEKEIALRYHSEKLAITFGLL---NTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            + LV H D+ +EEKE AL YHSEKLA+ +GL+        + +RV+ NLR+CGDCH   K IS I+ R+I++RD  RFH F+DG CSC DFW
Sbjct:  491 TGLVLH-DIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            +++ E+K+  +  HSEKLAI+FGLL+ P    I V+KNLRVC DCH+  K +S + NR+I++RD  RFHHF  G CSC D+W
Sbjct:  983 ELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            ++++ EK   L  HSE++AI +GLL TP    +R+ KNLRVC DCH+  K++S +F R IV+RD  RFHHF  G CSCGD W
Sbjct:  879 NVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   41 EEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            EE     R HSE+LAI FG+LN+ PGT I V+KNLRVC DCH   K +S I +RQ V+RD  RFH+F+DG CSC D+W
Sbjct:  546 EEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+++E K+  +  H E+LA+ +GLL+ P G+TIR++ NLR+C DCH A K+IS I  R+IV+RDV RFH F++G C+C D+W
Sbjct:  535 DVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616          
The following BLAST results are available for this feature:
BLAST of EY757235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PP428_ARATH1.505e-2153.66Pentatricopeptide repeat-containing protein At5g50... [more]
PP377_ARATH1.966e-2155.42Putative pentatricopeptide repeat-containing prote... [more]
PP320_ARATH2.568e-2158.54Pentatricopeptide repeat-containing protein At4g18... [more]
PP411_ARATH3.353e-2154.88Pentatricopeptide repeat-containing protein At5g40... [more]
PP364_ARATH3.353e-2154.88Pentatricopeptide repeat-containing protein At5g04... [more]
PPR71_ARATH4.380e-2153.26Pentatricopeptide repeat-containing protein At1g34... [more]
PP307_ARATH5.720e-2152.44Pentatricopeptide repeat-containing protein At4g13... [more]
PP296_ARATH5.720e-2152.44Pentatricopeptide repeat-containing protein At3g63... [more]
PP223_ARATH5.720e-2158.97Putative pentatricopeptide repeat-containing prote... [more]
PP313_ARATH7.470e-2151.22Pentatricopeptide repeat-containing protein At4g15... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-019-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757235 ID=EY757235; Name=EY757235; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGCTCTAGTCCATCATGGGGATATGGAAGATGAAGAGAAAG
AAATTGCGCTTAGATATCATAGTGAGAAACTAGCCATTACTTTTGGGCTC
CTAAACACTCCACCTGGAACTACAATTCGTGTGGTGAAGAACCTTCGGGT
CTGTGGTGATTGTCATTCTGCGGCTAAAATTATATCACTGATTTTTAATA
GGCAGATAGTCCTTAGAGATGTCCAACGTTTCCATCACTTCAGAGATGGG
AAGTGCTCTTGTGGTGATTTCTGGTGATGAAATTGATTTAACCAGTAATC
ATTTGGAGAAATGTATCTTGGCCTTGTCTAGTGTCCATTGTCACCCCAGA
TATAAGTGAAAAATGCTGTAGTAGTGCTAGTGGGTACTTCATTGCATTGA
CTACTTAGAGGCTTTGCTTGTGCCCCATGTCATTTGAGAACGTGGAAGAA
TGTGCAAATGGAGAACCCACTCAGGATTCCCCACGTAAGTTACTGAGGTA
AAGGAAATATTAAATCATTAAATTCAACAATTGAGAATTTAGATAAAAAA
AAAAAAAAAAAAAAAAAAAGGAGGGTAGCTGCTCTAGAGATACAATCTAT
GCACGCGATGATACGACCTCATACTTCTTCTATGAATCTCAATTAATGAT
CTGCGGGTCGAAGTTCTACGACGTGAATACTGAGACATGCCGGAACTAAC
TACTGGTCGTCTTGCACCTCTCCCCTTTGCGCTAGTGGAATATGACCAGA
CGGACGCACTATCCTCCTTCCACAGTTGAACTGCTAAGTGACTATGCGAG
CCCCCTGAGAGCTCATAAGGGGGGGTGTTGTGTGATTCGGACANTAAACT
GCTATGTTGCAGCGC
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