EY757232

Overview
NameEY757232
Unique NameEY757232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 1.485e-86
Identity = 158/208 (75.96%), Postives = 174/208 (83.65%), Query Frame = 2
Query:    5 ASAMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAF 613
            A++    S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYP G+FDPLGLA+DPEAF
Sbjct:    2 ATSTIQQSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 4.322e-86
Identity = 156/206 (75.73%), Postives = 172/206 (83.50%), Query Frame = 2
Query:  125 SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWAD 739
            S+G  WYGPDR K+LGP S   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYP  SFDPLGLADDP+ FAELKVKEI NG +AMFS  GFFVQAIVTGKGP++N AD  AD
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.258e-85
Identity = 156/220 (70.91%), Postives = 180/220 (81.82%), Query Frame = 2
Query:  101 RKTGSKSV---SSGSPWYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWADLSI 748
            +KT +K+    SSG  +YGP+R K+LGP S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYP  SFDPLGLADDP+ FAELKVKEI NG +A FS  GFFVQAIVTGKGP++N  D  A+ ++
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTV 239          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 4.779e-85
Identity = 173/252 (68.65%), Postives = 189/252 (75.00%), Query Frame = 2
Query:   35 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWAD--TWADLSIQCLGLRHHFVPG 784
            + K   L P  + L      +M K  +KS  S S      RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE+ NG +AMFS  GFFVQAIV+ K  LEN AD   W  ++   L    +FVPG
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWT-VNNNALSNVTNFVPG 267          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.326e-81
Identity = 158/244 (64.75%), Postives = 182/244 (74.59%), Query Frame = 2
Query:    5 ASAMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPXGS-FDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWAD 727
            ++ +  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYP G  FDPLGLADDP  FAELKVKEI NG +AMFS  GFFVQAIVTGKGPLEN  D
Sbjct:   10 STTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 244          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.078e-80
Identity = 160/241 (66.39%), Postives = 180/241 (74.69%), Query Frame = 2
Query:   17 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPXGS-FDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWAD 727
            A S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYP G  FDPLGLADDP  FAELKVKEI NG +AMFS  GFFVQAIVTGKGPLEN  D
Sbjct:    8 AASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFD 247          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.105e-76
Identity = 146/220 (66.36%), Postives = 171/220 (77.73%), Query Frame = 2
Query:  140 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWADLSI-QCLGLRHHFVPG 784
            +YGPDR K+LGP S  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYP G FDPLGLADDP+ FAELKVKEI NG +AMFS +GFFVQAIVTGKGP++N  D  AD ++ +       F PG
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.474e-74
Identity = 144/214 (67.29%), Postives = 166/214 (77.57%), Query Frame = 2
Query:  104 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWAD 739
            K  SKS SS + +YGPD       L  + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYP  +FDPLGLADDP+ FAELKVKEI NG +AMF+ +GFFVQAIVTGKGP+EN  D  A+
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLAN 257          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.449e-59
Identity = 115/150 (76.67%), Postives = 125/150 (83.33%), Query Frame = 2
Query:  341 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWAD-LSIQCLGLRHHFVPGK 787
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYP  +FDPLGLADDPEA AELKVKEI NG +AMFS  GFFVQAIVTGKGP+EN  D  AD ++        +FVPGK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY757232 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.348e-46
Identity = 112/217 (51.61%), Postives = 135/217 (62.21%), Query Frame = 2
Query:  113 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELKVKEIXNGGVAMFSHVGFFVQAIVTGKGPLENWADTWAD 739
            SK+VS  S     WYGPDR  +L  G L   E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I+   +LA+ A +VVL+G  E YRI  G   +  D L+P G FDPLGLA DPE  A LKVKEI NG +AMF+ +GFF+QA VTG+GP+EN A   +D
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSD 260          
The following BLAST results are available for this feature:
BLAST of EY757232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_SILPR1.485e-8675.96Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLMO4.322e-8675.73Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.258e-8570.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO4.779e-8568.65Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC9.326e-8164.75Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.078e-8066.39Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE3.105e-7666.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA6.474e-7467.29Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.449e-5976.67Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH3.348e-4651.61Chlorophyll a-b binding protein CP26, chloroplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-019-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757232 ID=EY757232; Name=EY757232; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGCAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGA
ACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATG
CGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCC
GGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACT
TGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCA
GCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTG
CAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGG
CCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAGCT
CAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGAT
CCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGG
GAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACT
GACCCATTGTACCCANGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGA
CCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCANGAATGGAGGGG
TGGCTATGTTCTCCCATGTTGGTTTCTTCGTTCAGGCCATTGTCACCGGC
AAGGGACCGTTAGAGAACTGGGCCGACACTTGGGCTGACCTGTCAATACA
ATGCCTGGGCCTACGCCACCACTTTGTCCCGGGAAAGGGAGCTCCGGTGA
TAAGAGTTTTTCCCTTTCGGNTTCTGGGATATCTGTAATCTGTTGGGAGC
TCTGGGAACCTTAATTTGAGTTGTGATATTTAAAAAGGCTCCATTGGACC
TAAANAAAAAAAAAAAAAANAAAAATAAT
back to top