EY757179

Overview
NameEY757179
Unique NameEY757179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Homology
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 35/97 (36.08%), Postives = 48/97 (49.48%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 298
            SAIW WMT  +  +PS HD   G W P+  D  + R P +G   NI+ G   CG G    + + +  Y  Y  +LGV      P + + C  QK+FN
Sbjct:  236 SAIWFWMT-AQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGV-----SPGDNIDCGNQKSFN 326          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +A+W WMT  ++ +PSAHD   G W P+  D+   R P FG   NI+ G   C  G    M+N +  Y  Y  +LGV      P   L CA Q+ F
Sbjct:  156 TALWFWMT-AQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGV-----DPGNNLDCANQRPF 245          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +AIW WMT  + ++PS HD  +G W P+  DT + R P +G   NI+ G   CG G  DA  + + +Y  Y D+LG     AG    L C  Q+ F
Sbjct:  170 TAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG-----AGYGSNLDCYNQRNF 259          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 37/105 (35.24%), Postives = 53/105 (50.48%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAA 322
            +A+W WMTP + ++PS+HD   G W P+  D  + R P +G   NI+ G   CG G  D + N +  Y  Y    G+G    G N  L C  Q+ FN  ++   A
Sbjct:  240 TALWFWMTP-QGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIG---TGGN--LDCYNQRPFNSGSSVGLA 338          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAAS 325
            +A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D+LGVG    GPN  L C  Q  F+ +   ++A+
Sbjct:  241 TALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFDGDIMSASAA 339          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAAS 325
            +A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D+LGVG    GPN  L C  Q  F+     ++A+
Sbjct:  241 TALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFDGGIMSASAA 339          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +A+W WMTP +  +PS HD   G W P+  D  + R P +GT  NI+ G   CG+G    + + +  Y  Y D+ G+G       + L C  Q+ F
Sbjct:  218 TALWFWMTP-QSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGY-----GDNLDCYSQRPF 307          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +AIW WMTP + ++PS+HD  +G+W P+  D  + R P  G   NI+ G   CG G   A+ + + +Y  Y  +L V      P + L C  Q+ F
Sbjct:  161 TAIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNV-----APGDNLDCYNQRNF 250          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +AIW WMTP + ++PS+HD   G W P+  D+ + R P +G   NI+ G   CG G  + +++ V  Y  Y  + GV      P   L C  Q++F
Sbjct:  230 TAIWFWMTP-QANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGV-----DPGGNLDCNNQRSF 319          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 34/96 (35.42%), Postives = 48/96 (50.00%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SA+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G    + + +  +  Y DLLGVG         L C  Q  F
Sbjct:  226 SALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGY-----GNNLDCYSQTPF 315          
The following BLAST results are available for this feature:
BLAST of EY757179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CHI3_TOBAC4.143e-1236.08Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHID_SOLLC5.411e-1237.50Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI8_ORYSJ5.411e-1238.54Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ5.411e-1235.24Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ7.066e-1239.62Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI9.229e-1239.62Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI2_PEA9.229e-1234.38Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIP_TOBAC2.056e-1135.42Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIX_PEA2.685e-1135.42Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_PHAVU4.580e-1135.42Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-018-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757179 ID=EY757179; Name=EY757179; organism=Citrus sinensis; type=EST; length=673bp
CCACGCGTCCGCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGC
CTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGAT
ACTTTGTCCAAACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTA
TGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGCTATGAACAACATTG
TCTCTCATTACTTGTATTACCTTGATCTGTTGGGTGTTGGCCGAGAGCAG
GCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCAGAAAGCCTTCAACCC
AAACACCGCACCTTCAGCTGCATCTTCTTGAGGACGTTTATTGTAGCCAA
GCTATTATTGTGGGAGTGACTCTCTCTCTCTCTCTAGGTGGGTACCATTA
CAATAAGACTGGGGTTAATTAAACTATTTGTTGTAAGTTTTTTTTTTTTT
TTCCATCTTTTCATATATTGCGCAAGGTCAATTAGTGTGTGGATTGGTCT
GCCCCTCTTCATTGCCGTTGTAGATTTGAGATTCATTTGGTTTGTAAAAT
CTTCGTTATATCTGGTTACATATGTAATGATGAACCGCATGAACCACTCG
TGTGTTTCAATAGCAGAATTGTAAAGTATATGCTTATATTTTATTAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
back to top