EY757120

Overview
NameEY757120
Unique NameEY757120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:350..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   77 GEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:   77 GENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG+TNP+++APGTIRGD  +  GRNIIHGSDS ESAQ+E+ LWF    I +++     W+YE
Sbjct:   77 GENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNIIHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            G+G +   R IIGATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:   77 GKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149
[Close]
BLAST of EY757120 vs. ExPASy Swiss-Prot
Match: NDK_STAHJ (Nucleoside diphosphate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ndk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:   11 GEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 226
            GE  V   R IIG TNP+++ PG+IRGDL +  GRN+IHGSDSVESAQ+EI LWF +  + ++++    W+YE
Sbjct:   77 GEDAVDVSRHIIGKTNPSEATPGSIRGDLGLTVGRNVIHGSDSVESAQREINLWFKEEELSSYEAPRDTWLYE 149
The following BLAST results are available for this feature:
BLAST of EY757120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
NDK_STAAB6.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA96.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA86.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA36.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA26.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA16.631e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAES8.661e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_STAEQ8.661e-1754.79Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_SYNP21.131e-1650.68Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_STAHJ1.131e-1653.42Nucleoside diphosphate kinase OS=Staphylococcus ha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-017-F04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757120 ID=EY757120; Name=EY757120; organism=Citrus sinensis; type=EST; length=451bp
CCACGCGTCCGGTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAG
CCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCT
ATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAGAGTGC
CCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGA
GCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGC
CTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTT
ATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAAT
TGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTGGTTGCCATA
TACAATATTTAAGCTTTTTTGTTGACTGTATTAAAAAAAAAAAAAAAAAA
A
back to top