EY756885

Overview
NameEY756885
Unique NameEY756885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig491 contig Csv1_Contig491:47..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: YDS1_SCHPO (Uncharacterized protein C4F8.01 OS=Schizosaccharomyces pombe GN=SPAC4F8.01 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 57/205 (27.80%), Postives = 95/205 (46.34%), Query Frame = 3
Query:   57 IFSKKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQL--SAAPKGKIASKNTEDASSSGIDQLEKR 665
            +F    +P+E LR  +R +  A R +++E   L Q E+ L  EIK +AK GN GA +I AR L+RLR     +  ++ Q++ I+   Q M                       M     A++ ++F++++  M+   EM+ + +                  +VLDEIGVD++  L  +A   G +    TED   + +D+L KR
Sbjct:    7 LFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENM-DDALEEDDEEEADELVNKVLDEIGVDLSQGLPDAATQIGTVPELKTEDNLQARLDELAKR 210          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 52/228 (22.81%), Postives = 104/228 (45.61%), Query Frame = 3
Query:   42 KKEVNIFSKKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAA--------PKGKIASKNTEDASSSGID------QLEKRLAALRN 683
            ++ +NI   KP+PK+ LR+ +R+++   R +E++I  +++EE+ +   IK  AK  +  + K LA++++  R+ +  L  ++AQ+  I+ H     A                     M+  + A  M+EF K+  +  +  E +++ I                  +VL  I  + A++L  A        P  K ++   E+A + G+D      ++  RLA +R+
Sbjct:    2 ERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CM2A1_DICDI (Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium discoideum GN=chmp2a1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 38/138 (27.54%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   69 KPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSD 482
            K  P++ L++SKRE+    R M++E+  L+  E++   +IK+ AK G     K +A  L++LR Q+  ++ ++  +  ++T T  + A+                   Q +  +  K M E++KQ+ +++MT EMM D
Sbjct:    8 KKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAKRMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASATKAMSTMNKQTDLVQLQKTMMEYEKQTQRVEMTEEMMQD 145          
The following BLAST results are available for this feature:
BLAST of EY756885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
YDS1_SCHPO4.143e-1627.80Uncharacterized protein C4F8.01 OS=Schizosaccharom... [more]
VP241_ARATH3.283e-1322.81Vacuolar protein sorting-associated protein 24 hom... [more]
CM2A1_DICDI9.552e-1327.54Charged multivesicular body protein 2a homolog 1 O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-G07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756885 ID=EY756885; Name=EY756885; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGAATTATTCTAACTCACAACAACATCGAAACAAAAAAGAA
GTGAACATCTTTTCCAAAAAGCCAAACCCTAAAGAGGCTCTTCGAGAGAG
CAAGAGAGAAATGCAGCACGCTACTAGAGGCATGGAGAAGGAAATTGGAG
CACTACGACAAGAAGAAAAGAAGCTTGGTGCTGAGATAAAAAGAACCGCT
AAAACAGGAAATGAGGGTGCTACTAAAATTCTGGCCCGGCAGCTGATCAG
ACTGAGGCAGCAAATAGCTAACTTACAGGGGAGTCGAGCTCAAATAAGAG
GCATAGCTACTCACACACAGGCTATGCATGCACATTCTTCAGGTGCTGTT
GGCATGAAAGGAGCCAGTAAGGCAATGGCAGCCATGAATAAGCAAATGGA
ACCTGCGAAGCAAGCCAAGGTTATGCGGGAATTCCAGAAGCAATCAGCAC
AGATGGATATGACTACTGAAATGATGTCCGATACCATTGATGATGCCTTG
GACAATGATGAGGCTGAAGAGGAAACTGAAGAGCTGACAAATCAAGTGCT
AGATGAAATTGGTGTTGATGTTGCCTCACAGCTGTCAGCAGCTCCAAAAG
GTAAAATCGCCAGTAAAAACACGGAAGATGCCAGCAGTTCGGGCATTGAC
CAGCTTGAGAAGCGGTTGGCGGCTCTCAGAAATCCATGAGTTTTTGCAGT
TTCCTCTTCAAAACACCTTTGTTTTTATATAAATTTTTTTGTACAATAAA
TCTTTTAGNTGGAATCGAGGTGATCCTCCCTACTACAGTTCGCACCCCTG
TAAGATGCCACTGTCGATATAATCCCATTGATTGATTAAAAAAGAAAAAA
TGGGC
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