EY756882

Overview
NameEY756882
Unique NameEY756882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKS 429
            G  MD+ TAL  VL  +L H GLA G+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ KS
Sbjct:    9 GGVMDVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.978e-30
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   61 LGEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKSH 432
            L  AMD+ TALQ VL KSL   GL  G+H+  K ++K  A LC+LAE  ++P+Y KLV ALC +H + L+ V S   LGEW+GLCKID  G   KV GCS VV+ DFGEE+  L+VV  H++ +
Sbjct:   15 LDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQN 138          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_DICDI (40S ribosomal protein S12 OS=Dictyostelium discoideum GN=rps12 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   76 DLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHI 423
            D M ALQ V+ +SLA  G+ARGLHE  K ++K  A+LCVLA +C++P++V+LVKAL  +HN+ L+ VP    LGEWAGLCK+D    A KV  CS +V+  FG+ESD    + ++I
Sbjct:   18 DPMVALQKVIKESLAVQGVARGLHETVKALDKRTARLCVLASNCDEPNFVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12A_SCHPO (40S ribosomal protein S12-A OS=Schizosaccharomyces pombe GN=rps12a PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.567e-27
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   67 EAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGL 402
            E + +  AL+ VL ++L H GLARG+ E +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V     LGEWAGLC +D  GNA KV GCSCV V D+GE+S  L
Sbjct:   25 ETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAAL 136          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12B_SCHPO (40S ribosomal protein S12-B OS=Schizosaccharomyces pombe GN=rps12b PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   88 ALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVV 411
            +L+ VL ++L H GLARG+ E +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V     LGEWAGLC +D  GNA KV GCSCV V D+GE+S  L  +
Sbjct:   35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_ERYGR (40S ribosomal protein S12 OS=Erysiphe graminis subsp. hordei GN=RPS12 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   73 MDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEES 393
            M ++ AL+  L  +L H GLARGL E +K +++  A +CVL E C +  Y KL+ ALC++H + L+ VP    LGEWAGLC +D  GNA KV  CSCVVV ++GEES
Sbjct:   12 MTVLDALKGALRTALMHDGLARGLREASKALDRREAHMCVLNEACEEEAYKKLIVALCSEHKIPLIKVPDGKQLGEWAGLCVLDREGNARKVVNCSCVVVKNWGEES 118          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_CAEEL (40S ribosomal protein S12 OS=Caenorhabditis elegans GN=rps-12 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.766e-24
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   73 MDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKS 429
            MD   AL+ VL  +    GLA+GLHE  K ++K  A  CVLAE+C++P YVKLV+ LCA+H + L+ V     +GE+ GLCK D  G A KV GCS  VV ++G E  G  ++  +  S
Sbjct:   20 MDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFAS 138          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_YEAST (40S ribosomal protein S12 OS=Saccharomyces cerevisiae GN=RPS12 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   88 ALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCAD--HNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQH 420
            AL+VVL  +L H GLARGL E  K + +  A L VL     + + +KLV+ L  D  + V L+ V  A  LGEWAGL KID  GNA KV G S VVV ++G E+D L+++ +H
Sbjct:   27 ALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEH 139          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_PLAF7 (40S ribosomal protein S12 OS=Plasmodium falciparum (isolate 3D7) GN=RPS12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   76 DLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPS-ANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEES 393
            D +TA+Q V+  +  H GL  G+ E  K IE   A++C L++ C++P Y KL+  LCA+ N+ L  V + +  LG WAGL K+D+ GNA K+ G S V V DFGE+S
Sbjct:   20 DNVTAIQKVIKNAHVHDGLKIGIREVIKSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDS 126          
The following BLAST results are available for this feature:
BLAST of EY756882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_ORENI6.148e-3253.2840S ribosomal protein S12 OS=Oreochromis niloticus... [more]
RS12_MOUSE6.148e-3253.7240S ribosomal protein S12 OS=Mus musculus GN=Rps12... [more]
RS12_DROME1.978e-3051.6140S ribosomal protein S12 OS=Drosophila melanogast... [more]
RS12_DICDI7.034e-2850.8640S ribosomal protein S12 OS=Dictyostelium discoid... [more]
RS12A_SCHPO1.567e-2751.7940S ribosomal protein S12-A OS=Schizosaccharomyces... [more]
RS12B_SCHPO1.732e-2651.8540S ribosomal protein S12-B OS=Schizosaccharomyces... [more]
RS12_ERYGR8.598e-2650.4740S ribosomal protein S12 OS=Erysiphe graminis sub... [more]
RS12_CAEEL2.766e-2445.3840S ribosomal protein S12 OS=Caenorhabditis elegan... [more]
RS12_YEAST2.679e-1946.9040S ribosomal protein S12 OS=Saccharomyces cerevis... [more]
RS12_PLAF74.570e-1944.8640S ribosomal protein S12 OS=Plasmodium falciparum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756882 ID=EY756882; Name=EY756882; organism=Citrus sinensis; type=EST; length=674bp
CCACGCGTCCGGACATGTGATGACGCTGCCCCTGCTGTTGAGACAGCACC
TCCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCTTTGCAGGTTG
TGTTGACAAAATCACTTGCTCATGGTGGACTTGCTCGTGGCCTTCATGAA
GGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGA
GGATTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTG
ACCATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAATACCCTCGGCGAG
TGGGCTGGTTTGTGCAAGATTGACTCATATGGAAACGCCACGAAGGTTGA
GGGTTGTTCCTGTGTTGTTGTGAACGATTTCGGAGAGGAAAGCGATGGTC
TTAACGTTGTTCATCAGCACATCAAATCTCACTGAGTATCAGAGATGGAT
TCATAGGTCAACTATTATATTTATAGAGAGGGCCTTGACTTTTTTCTGCC
AAATTGTGTGTGGTTGTCTCACTCCAAGGAGATTTTGTGATCGTTAAGTG
CTATGACTTACAGTACTCTTGATCCACAATCCTTTATTGCAACTGAAAAC
ATCAATCCTTTTCTATATATTTGCTGGATTGAATCTTTTCAAAGCGAAAG
TCAGGATATTTAGAAAAATATACG
back to top