EY756878

Overview
NameEY756878
Unique NameEY756878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756878_ssr713 microsatellite EY756878_ssr713:713..727. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10693 contig Csv1_Contig10693:1003..1852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN1_ARATH (Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis thaliana GN=MAN1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWL--SSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSP-STANVITQQAHKLYQIR 405
            ++  ID AT+H YPD WL   SS   +Q +F++ W+  HI+D ++I++KP+L+ EFGKS K PG+S  +R+  F  VY  IY SA+        +FWQL T       DGYE+ +   P +TA +I  Q+ KL  ++
Sbjct:  265 QIPDIDFATIHIYPDSWLPLQSSRTGEQDTFVDRWIGAHIEDCDNIIKKPLLITEFGKSSKYPGFSLEKRNKFFQRVYDVIYDSARAGGSCTGGVFWQLTTNRTGLLGDGYEVFMQAGPNTTAQLIADQSSKLKNLK 401          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN4_ARATH (Putative mannan endo-1,4-beta-mannosidase 4 OS=Arabidopsis thaliana GN=MAN4 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.663e-23
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            +  ID A++H   D W    +   +L+F+  WL+ HI+DA++IL+KP++LAEFG     P Y+   RD +F T Y  IY+SA++       LFW++++EGM  F     I+LS   ST N+I++ A K+
Sbjct:  271 IDAIDFASMHCGSDLWFQRLDQNSRLAFIKRWLEGHIEDAQNILKKPVILAEFGLGSDTPRYTLANRDGVFTTTYDIIYASAQKGGSAAGALFWEVISEGMSNFAGPSSIILSDKSSTVNIISEHARKM 399          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN6_ORYSJ (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.479e-23
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDP--GYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQI 402
            V  ID A+VH+YPD WL  ++  +++ +L+NW+D+H+ D+E IL+KP+L  E G  +       ST  RD++   VY KIY SA++       L WQL+ EG   + D + +V    PST ++IT Q+ +L ++
Sbjct:  293 VEHIDFASVHAYPDSWLPRASLEEKVRYLSNWVDSHLNDSEQILKKPVLFTEVGYLQHSDANSNSTVDRDIILRIVYDKIYDSARKLQAGSGALIWQLMVEGTHMYGDNFSVVARDRPSTYSLITNQSCRLQRL 426          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN6_ARATH (Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.479e-23
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            +V GID A+VH YPD W+S +     L F ++W+  H++DAE  L  P+L  EFG S  DPG++T  RD+M NTVY    +S ++       L WQ+  +G +   DGY + L+++ + + +I+ Q+ +L
Sbjct:  287 QVLGIDFASVHVYPDSWISPAVSNSFLEFTSSWMQAHVEDAEMYLGMPVLFTEFGVSAHDPGFNTSFRDMMLNTVYKMTLNSTRKGGAGAGSLVWQVFPQGAEFMDDGYAVYLTRAHTASKIISLQSKRL 416          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN3_ORYSJ (Mannan endo-1,4-beta-mannosidase 3 OS=Oryza sativa subsp. japonica GN=MAN3 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSR-KDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTE-----GMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            R  G+D AT+H YPD WL  S   +Q +F  NW  +H+ D    L KP+L+ E+GK   K  G +  QR+   + V   IY+SA R        FWQLL +     GMD  RDGYEI+L++    A++I + + +L
Sbjct:  269 RAAGVDFATIHLYPDVWLWGSTADEQAAFFRNWTRSHVHDTAAFLGKPLLVTEYGKFLWKGGGANKTQRNYFLDVVLDAIYASASRGGPLVGGAFWQLLLDDDVVAGMDDLRDGYEIILAEDSRAASIIGEHSEQL 404          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN2_ARATH (Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   16 IDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQI 402
            ID A+VH YPD W       ++L F+  W+ +HI+D +  L+KP+L  EFG S  +  Y   QRD  + T++  IY SAKR       L WQ L EGM+ F D + IV  +  S   ++ +Q+ +L +I
Sbjct:  287 IDFASVHIYPDHWFHDQGFEEKLKFVVKWMLSHIEDGDKELKKPVLFTEFGLSNLNKDYDPSQRDRFYRTIFDVIYKSAKRKRSGAGTLVWQFLIEGMEGFNDDFGIVPWEQDSIQRLMIEQSCRLSRI 415          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   16 IDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQI 402
            ID A+VH YPD W  +    ++L F+  W+ +HI+D    L+KP+L  EFG S ++  Y   QRD  +  ++  +Y SAKR       L WQL  EGM+ F D + IV  +  S   ++ +Q+ +L ++
Sbjct:  286 IDFASVHIYPDHWFHNQTFEEKLKFVVKWMQSHIEDGLKELKKPVLFTEFGLSNQNKDYEPSQRDKFYRIIFDVVYKSAKRKKSGAGTLVWQLFMEGMETFNDDFGIVPHEQDSIYKLMIEQSCRLGKV 414          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN4_ORYSJ (Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa subsp. japonica GN=MAN4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSR-KDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTE-----GMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            R   +D AT+H YPD WL  S+  +Q +F  NW  +HI      L  P+L+ E+GK   K+ G +  QR+   + V   IY+SA R        FWQLL +     GMD+ RDGYEI+L++    A++I + + +L
Sbjct:  262 RTAAVDFATIHLYPDVWLWGSSADEQATFFRNWTRSHIDATAAYLGMPLLVTEYGKFLWKEVGANKAQRNYFLDLVLDAIYASASRGGPLVGGAFWQLLLDGDIVAGMDSLRDGYEIILAEDSRAASIIGEHSEQL 397          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN8_ORYSJ (Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa subsp. japonica GN=MAN8 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.867e-19
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   13 GIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVI 372
            GID A++H Y D WL  S   + L F++ W+  HI DA ++L  PI++ EFG S KD  +    R+    TVY    SS K        L WQL  EG +   DGY ++ ++SPST +++
Sbjct:  244 GIDLASIHVYSDTWLPHSIKENHLQFVDKWMQQHIHDAANLLGMPIVVGEFGVSVKDGKFGNEFREDFMKTVYRIFLSSWKEGVIGGGCLLWQLFPEGAEHMDDGYAVIFAKSPSTLSLL 363          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN7_ORYSJ (Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa subsp. japonica GN=MAN7 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   13 GIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVI 372
            GID A++H Y D WL  S   + L F++ W+  HI DA ++L  PI++ EFG S KD  +    R+    T+Y    SS K        L WQL  EG +   DGY ++ ++SPST +++
Sbjct:  251 GIDLASIHVYSDIWLPQSIKENHLQFVDKWMQQHIDDAANLLGMPIVVGEFGVSVKDGKFGNEFREDFMKTIYRIFLSSWKEGVIGGGCLLWQLFPEGAEHMDDGYAVIFAKSPSTLSLL 370          
The following BLAST results are available for this feature:
BLAST of EY756878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN1_ARATH4.109e-2440.15Mannan endo-1,4-beta-mannosidase 1 OS=Arabidopsis ... [more]
MAN4_ARATH2.663e-2338.76Putative mannan endo-1,4-beta-mannosidase 4 OS=Ara... [more]
MAN6_ORYSJ3.479e-2338.06Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa... [more]
MAN6_ARATH3.479e-2337.69Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis ... [more]
MAN3_ORYSJ7.253e-2138.97Mannan endo-1,4-beta-mannosidase 3 OS=Oryza sativa... [more]
MAN2_ARATH9.473e-2137.98Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis ... [more]
MAN5_ARATH2.756e-2035.66Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MAN4_ORYSJ3.047e-1937.50Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa... [more]
MAN8_ORYSJ8.867e-1938.33Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa... [more]
MAN7_ORYSJ1.512e-1837.50Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-F12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756878 ID=EY756878; Name=EY756878; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGGGGCATTGATTCTGCAACAGTTCATTCCTACCCTGATCA
ATGGTTATCAAGCTCAAATGATCGAGATCAACTTTCTTTCTTGAACAACT
GGCTCGACACACACATCCAAGATGCTGAGCACATTCTTCGGAAGCCAATA
CTCCTAGCAGAATTCGGGAAATCGCGGAAAGATCCTGGTTATAGCACCTA
CCAGAGAGATGTAATGTTTAATACCGTGTACTACAAGATTTATTCTTCGG
CTAAAAGAGGAGGTGCAGCAGCTGGAGGCCTGTTTTGGCAACTTCTGACT
GAAGGAATGGACGCTTTTCGAGATGGTTATGAGATAGTTTTGAGCCAAAG
CCCCTCGACTGCAAATGTTATTACTCAACAGGCTCACAAGTTGTACCAAA
TTCGTAAGATTTTCGCAAGAATGAGAAATGTTGAGAGGCGGAAGAGGTCC
AGGGGCATGAGGAGACGTCAGAGGCAGGGTGGAAACAGGGGAAGGCGCAT
AGGAAAACTGAAATATGTATTTGCTTGAACGAAATGAGACCCGGGTTGTA
TCAGCGCGTGGTGCTATNCACTTAAACGGATAGTCAGTCAGGGTTAGGGA
TAGCAACTGGATCGCTCCATAATAGATTCCCATATATTCATTTAATTAGA
TCCGAATAATATCATCCTAAAAATTTTTAGATTTGGAAATGGATATTTTA
AAATTTATTCCGATGGAATGGAATGGATATGAAAATTATTTTTACTTATG
GGAATTCCGTTTACCCAAAAAAAAAAAAAATAAANNNNNNNNNNNNTNTN
ATNTATTTTAAGGGGGGGCCGCTCTAAGGACCAAGTTTAATAGCGGGGGT
G
back to top