EY756858

Overview
NameEY756858
Unique NameEY756858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:694..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.498e-14
Identity = 62/186 (33.33%), Postives = 87/186 (46.77%), Query Frame = 1
Query:   16 YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPW--------------KEYSRTVIMQSSITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGFRVITSATEAQ 498
            YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +        + NQ  G+VI  SR+   SD  P +      LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  176 YQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDRRQLTDAQAAE 351          
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 62/186 (33.33%), Postives = 87/186 (46.77%), Query Frame = 1
Query:   16 YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPW--------------KEYSRTVIMQSSITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGFRVITSATEAQ 498
            YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +        + NQ  G+VI  SR+   SD  P +      LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  176 YQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDAQAAE 351          
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 52/179 (29.05%), Postives = 75/179 (41.90%), Query Frame = 1
Query:    4 RVRAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 540
            R   +QDTL       FF NC I GT DFIFG  A++     +HA     G + ++ A  R    +  G      ++               YLGR W  + + V   + ++ V++P+GW E        T+FYGE+   G G+  + RV            EA  F    +I GS WL
Sbjct:  191 RFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA--VGDGLR-VIAAHNRQSTTEQNGYSFVHCKVTGVGT--------GIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRV---AHTQDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 49/175 (28.00%), Postives = 78/175 (44.57%), Query Frame = 1
Query:   16 YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 540
            YQDT+   +   FF +C I GT DFIFG+  ++     ++          ++TA       + +G      ++  T            YLGR W  + + V   + ++ V++P+GW E        T+FYGE++  G G+    RVK   +       EA+ F    +I GSSWL
Sbjct:  172 YQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGI---RVITAHAGKSAAEKSGYSFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVK---YTQDIDDIEAKYFISLGYIQGSSWL 332          
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 47/175 (26.86%), Postives = 75/175 (42.86%), Query Frame = 1
Query:   16 YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 540
            +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T V++P GW E        T+FYGE++ +G G+  + RV    F       EA  F    +I GS WL
Sbjct:  195 FQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of EY756858 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 47/175 (26.86%), Postives = 75/175 (42.86%), Query Frame = 1
Query:   16 YQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 540
            +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T V++P GW E        T+FYGE++ +G G+  + RV    F       EA  F    +I GS WL
Sbjct:  195 FQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANRFLSLGYIQGSKWL 355          
The following BLAST results are available for this feature:
BLAST of EY756858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PMEA_ERWCH1.498e-1433.33Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD32.556e-1433.33Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME49_ARATH9.712e-1429.05Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME63_ARATH2.826e-1328.00Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME48_ARATH3.691e-1326.86Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH4.820e-1326.86Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756858 ID=EY756858; Name=EY756858; organism=Citrus sinensis; type=EST; length=777bp
CCACGCGTCCGAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCA
GTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTTATTTTTGGTA
ACGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAAT
TCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGGCTGACCCTAACCA
AAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATT
TAAAACCGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAG
GAGTACTCGAGGACGGTGATCATGCAGTCATCGATTACTGACGTGATCCA
CCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGT
TTTACGGAGAGCATCAGAACGCCGGAGCCGGTGCCGGAACTTCAGGGAGA
GTGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGC
TTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTG
GTTTCCCATTCTCCCTTNGGTTGTAATATTCACTANGAGTTTAAATTATA
TGTTTTGGATTAGTGGATCATANGTCTCTGGNCTTTCATTTGTAATATTT
GATTGAGCGTGTCTTATTCGTGGCTTCGATTTCACAAATACTATTGTGTG
ATTTACAAGAAATTAAATAGCATGGGAAGAATAATATTTTCCGCTTCTTT
AATTAAAAAAAAAAAAAAAAAAGGCCG
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