EY756836

Overview
NameEY756836
Unique NameEY756836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:24..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.643e-84
Identity = 148/184 (80.43%), Postives = 163/184 (88.59%), Query Frame = 3
Query:  153 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIR 704
            R +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE++
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELK 215          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.144e-80
Identity = 148/202 (73.27%), Postives = 160/202 (79.21%), Query Frame = 3
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIR 704
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE++
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDR--RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELK 218          

HSP 2 Score: 38.5058 bits (88), Expect = 1.144e-80
Identity = 24/50 (48.00%), Postives = 27/50 (54.00%), Query Frame = 2
Query:  701 QNGRXAMXFMLGXLXSAIVTGKGPLENLAD-TWXTXXHTCLGLPTXFVPG 847
            +NGR AM  M G    AIV+ K  LENLAD    T  +  L   T FVPG
Sbjct:  218 KNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.128e-79
Identity = 135/184 (73.37%), Postives = 155/184 (84.24%), Query Frame = 3
Query:  165 RKTGSKSV---SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIR 704
            +KT +K+    SSG  +YG +R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEI+
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIK 203          

HSP 2 Score: 36.965 bits (84), Expect = 2.128e-79
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  701 QNGRXAMXFMLGXLXSAIVTGKGPLENLAD 790
            +NGR A   M G    AIVTGKGP++NL D
Sbjct:  203 KNGRLASFSMFGFFVQAIVTGKGPVQNLDD 232          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 1.944e-74
Identity = 137/205 (66.83%), Postives = 156/205 (76.10%), Query Frame = 3
Query:  102 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIR 704
            G+A + +P  +   +  GRI+M             WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEI+
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIK 218          

HSP 2 Score: 41.5874 bits (96), Expect = 1.944e-74
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  701 QNGRXAMXFMLGXLXSAIVTGKGPLENLAD 790
            +NGR AM  M G    AIVTGKGPLENL D
Sbjct:  218 KNGRLAMFSMFGFFVQAIVTGKGPLENLFD 247          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.162e-73
Identity = 135/183 (73.77%), Postives = 150/183 (81.97%), Query Frame = 3
Query:  189 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIRMEGWLXSSCW 734
            S+G  WYG DR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEI+       SC+
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCF 216          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.603e-68
Identity = 147/255 (57.65%), Postives = 169/255 (66.27%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIR--------MEGWLXSSCWVXSXQPLSPARDR*RTWPTLGRPXXTHAWAY 827
            F+G+  N  P  + ++ G         ++   S   WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEI+        M G+   +  V    PL    D       L  P   +AW Y
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAI-VTGKGPLENLLDH------LDNPVANNAWVY 257          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.088e-67
Identity = 121/181 (66.85%), Postives = 139/181 (76.80%), Query Frame = 3
Query:  168 KTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIR 704
            K  SKS SS + +YG D          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEI+
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIK 224          

HSP 2 Score: 40.817 bits (94), Expect = 6.088e-67
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  701 QNGRXAMXFMLGXLXSAIVTGKGPLENLAD 790
            +NGR AM   LG    AIVTGKGP+ENL D
Sbjct:  224 KNGRLAMFACLGFFVQAIVTGKGPIENLTD 253          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.028e-63
Identity = 123/180 (68.33%), Postives = 142/180 (78.89%), Query Frame = 3
Query:  204 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIRMEGWLXSSC 731
            +YG DR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP+ FAELKVKEI+       SC
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.942e-46
Identity = 95/142 (66.90%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  405 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIRMEGWLXSSCWVXSXQPLSPARDR*RT-WPTLGRPXXTHAWAY 827
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVKEI+       S +    Q +   +      +  L  P   +AWAY
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 142          
BLAST of EY756836 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.074e-40
Identity = 91/184 (49.46%), Postives = 107/184 (58.15%), Query Frame = 3
Query:  177 SKSVSSGSP----WYGLDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIR 704
            SK+VS  S     WYG DR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DPE  A LKVKEI+
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIK 227          

HSP 2 Score: 38.5058 bits (88), Expect = 4.074e-40
Identity = 18/29 (62.07%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  701 QNGRXAMXFMLGXLXSAIVTGKGPLENLA 787
            +NGR AM  MLG    A VTG+GP+ENLA
Sbjct:  227 KNGRLAMFAMLGFFIQAYVTGEGPVENLA 255          
The following BLAST results are available for this feature:
BLAST of EY756836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB215_PEA4.643e-8480.43Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_MALDO1.144e-8073.27Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE2.128e-7973.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.944e-7466.83Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO2.162e-7373.77Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.603e-6857.65Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA6.088e-6766.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE2.028e-6368.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY2.942e-4666.90Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH4.074e-4049.46Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-B11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756836 ID=EY756836; Name=EY756836; organism=Citrus sinensis; type=EST; length=856bp
CTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACA
CAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGT
TCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGG
AACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCA
GGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGC
TCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTG
GGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAAT
CAGAATGGAAGGNTGGCTATGNTCTTCATGTTGGGTTNNCTCCNNTCAGC
CATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACACTTGGNCGA
CCNTGNNTCACACATGCCTGGGCCTACCCACCNACTTTGTCCCGGGAAAG
GAGCTT
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