EY756820

Overview
NameEY756820
Unique NameEY756820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.676e-59
Identity = 111/147 (75.51%), Postives = 122/147 (82.99%), Query Frame = 2
Query:   11 AKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            A+NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMG VEGYRI                +FDPLGLA+ P  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E+L DHIADPV NNAW  ATNFVPGK
Sbjct:  120 ARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.120e-54
Identity = 101/145 (69.66%), Postives = 117/145 (80.69%), Query Frame = 2
Query:   11 AKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 445
            AK+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F P
Sbjct:  107 AKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.344e-53
Identity = 103/144 (71.53%), Postives = 114/144 (79.17%), Query Frame = 2
Query:   20 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 448
            GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct:  124 GVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.520e-52
Identity = 103/143 (72.03%), Postives = 112/143 (78.32%), Query Frame = 2
Query:   23 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 448
            V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:  122 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.985e-52
Identity = 102/142 (71.83%), Postives = 112/142 (78.87%), Query Frame = 2
Query:   20 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 445
            GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F P
Sbjct:  113 GVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.422e-50
Identity = 98/145 (67.59%), Postives = 114/145 (78.62%), Query Frame = 2
Query:   14 KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 445
            ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:  128 EDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.472e-47
Identity = 96/145 (66.21%), Postives = 107/145 (73.79%), Query Frame = 2
Query:   20 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 448
            GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:  108 GVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.627e-46
Identity = 97/143 (67.83%), Postives = 108/143 (75.52%), Query Frame = 2
Query:   20 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 448
            G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNFVPG
Sbjct:  126 GQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.235e-45
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  104 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.235e-45
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  104 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY756820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_WHEAT1.676e-5975.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLRE2.120e-5469.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU2.344e-5371.53Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.520e-5272.03Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO1.985e-5271.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.422e-5067.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.472e-4766.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.627e-4667.83Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2F_SOLLC5.235e-4575.86Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.235e-4575.86Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756820 ID=EY756820; Name=EY756820; organism=Citrus sinensis; type=EST; length=609bp
CCACGCGTCCGCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCA
AGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAAC
CCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGT
TGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTG
GTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGT
TTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAA
GAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTA
TTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACATTGCTGAT
CCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTTCCCGGAAA
GTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAACATTATTC
TATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTACTAGTA
GCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCTTTTATTTCC
CAAAAAANN
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