EY756820

Overview
NameEY756820
Unique NameEY756820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:817..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.837e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  104 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.929e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  104 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.929e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  104 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.598e-44
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 2
Query:   83 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 451
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.302e-31
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 2
Query:   11 AKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 274
            AKNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+                AFDPLGLA+DP+ F
Sbjct:  118 AKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  107 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 445
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 69/135 (51.11%), Postives = 83/135 (61.48%), Query Frame = 2
Query:   14 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 415
            K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  136 KYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.940e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  236 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 415
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  236 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 415
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   44 WFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 415
            W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of EY756820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2D_SOLLC6.837e-4575.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.929e-4575.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.929e-4575.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.598e-4470.97Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR4.302e-3172.73Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_EUGGR3.191e-2656.41Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH1.212e-2551.11Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.940e-1560.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.645e-1558.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU2.145e-1440.48Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756820 ID=EY756820; Name=EY756820; organism=Citrus sinensis; type=EST; length=609bp
CCACGCGTCCGCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCA
AGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAAC
CCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGT
TGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTG
GTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGT
TTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAA
GAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTA
TTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACATTGCTGAT
CCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTTCCCGGAAA
GTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAACATTATTC
TATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTACTAGTA
GCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCTTTTATTTCC
CAAAAAANN
back to top