EY756820

Overview
NameEY756820
Unique NameEY756820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 52/126 (41.27%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   44 WFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 415
            W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   44 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 406
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of EY756820 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 2
Query:   44 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 406
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
The following BLAST results are available for this feature:
BLAST of EY756820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB11_SOLLC2.802e-1441.27Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH6.901e-1336.36Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.622e-1236.36Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756820 ID=EY756820; Name=EY756820; organism=Citrus sinensis; type=EST; length=609bp
CCACGCGTCCGCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCA
AGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAAC
CCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGT
TGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTG
GTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGT
TTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAA
GAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTA
TTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCACATTGCTGAT
CCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGTTCCCGGAAA
GTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTAACATTATTC
TATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGACTTACTAGTA
GCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCTTTTATTTCC
CAAAAAANN
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