EY756810

Overview
NameEY756810
Unique NameEY756810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:623..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.098e-42
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  181 LGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.434e-42
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  183 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.434e-42
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 LGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.214e-41
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1
Query:   10 RLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            RLGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  179 RLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.214e-41
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  181 LGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.071e-41
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  172 LGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.532e-41
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 LGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.532e-41
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  144 LGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.024e-41
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 LGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY756810 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.868e-41
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1
Query:   13 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
            LGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  181 LGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
The following BLAST results are available for this feature:
BLAST of EY756810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB29_MAIZE1.098e-4294.12Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC1.434e-4295.29Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU1.434e-4296.47Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE1.214e-4193.02Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_MAIZE1.214e-4192.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN2.071e-4192.94Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR3.532e-4191.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA3.532e-4192.94Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_SINAL6.024e-4194.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU7.868e-4190.59Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-H09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756810 ID=EY756810; Name=EY756810; organism=Citrus sinensis; type=EST; length=485bp
CCACGCGTCCGGCTCGGTGAAGTCACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCA
ACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTC
GGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAAT
TTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTNNNAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGG
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