EY756772

Overview
NameEY756772
Unique NameEY756772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756772 vs. ExPASy Swiss-Prot
Match: RS12_TRYBB (40S ribosomal protein S12 OS=Trypanosoma brucei brucei GN=RPS12 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  158 LMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 505
            L  AL++VL K+    GL  GL E  + +++  A LCVLA+DC   +Y KLV AL   +N+ L+++   + L +WAGL ++ ++G  RK + CSC+ V+DFGE +  L+ +   ++
Sbjct:   29 LEDALRIVLMKARETNGLICGLSEVTRALDRRTAHLCVLADDCEDEEYKKLVTALAKQNNIDLVSMDEREKLAQWAGLTRMAADGSVRKTLKCSCLAVRDFGERTKALDYLLSQLQ 144
The following BLAST results are available for this feature:
BLAST of EY756772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_TRYBB2.011e-1937.9340S ribosomal protein S12 OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-E03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756772 ID=EY756772; Name=EY756772; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGGTCGCCAGTCGCAGGCCAACGTCCGCTCTCCGCTAAGGG
AAAAAAGAGTAAATATTTGAACAAACAACAAGAAGACAATGTCTGGTGAT
GAGGCTGCCCCTGCTGTTGAGACAGCACCTGCTGCCCCCCTTGGTGAGGC
AATGGATCTGATGACGGCTTTGCAGGTTGTGTTGAGAAAATCACTTGCTC
ACGGTGGTCTTGCTCGTGGCCTTCATGAAGGTGCCAAAGTGATTGAAAAG
CATGCTGCCCAGCTCTGTGTATTGGCTGAAGATTGTAACCAACCTGACTA
TGTGAAATTGGTCAAGGCACTCTGTGCTGACCATAACGTAAGCTTGTTGA
CGGTTCCCAGTGCCAAGACCCTCGGCGAGTGGGCTGGTTTGTGCAAGATT
GACTCAGAGGGAAAGGCCAGGAAGGTTGTGGGTTGTTCCTGTGTTGTTGT
GAAGGATTTCGGAGAGGAAAGCGATGGTCTTAACGTTGTTCAGCAGCACA
TCAAGTCTCACTGAGTAGCAGTGATGGATTCGTAGTTCAACTTTTATATT
TATAGAGAGAGCCTTGTCTTTTTTTTGTCAAATTGTGTTTGGTTGTCTCA
CTCCAAGGAGATTTTGTGTTCGTTAGTTGCTATTACTTTTAGTACTTTTG
TTCCCTCATCCTTTATTTGCACTGAAAAACATCATCCTTTTCTATATTTT
TGCTGGATTGAATCTTTTTCAAGTGAAACTCTTTTGTGGTTTTTGAGCCA
ATATGAAACTCAGTGCTGTTAAAATTTGTTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNAAANNNNNNNNNTTNNAAAGGCGNCCGTTCTAAGGACCAAGC
TACGTACCGTGGATGGGACGCATAACTCTCTATAGGCCACTAAATCAATC
CCTGGCCGGCGTTTA
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