EY756771

Overview
NameEY756771
Unique NameEY756771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756771_ssr704 microsatellite EY756771_ssr704:704..715. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_PROM2 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29
Identity = 68/119 (57.14%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  +K PL TLG E SYD+ V   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLITINGRSGDDYLNFNPLHLNSVKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 130          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_GLOVI (30S ribosomal protein S9 OS=Gloeobacter violaceus GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29
Identity = 68/123 (55.28%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  250 AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            A   +GTGRRKCAIARV L  G+G+ +IN R   EYL      +   K PL TLG E  Y++ V A GGG++GQA AI LG+ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:    5 AAVYWGTGRRKCAIARVRLVPGSGELVINGRPGDEYLHFRQPLMSLAKAPLETLGLENQYNIIVNASGGGVAGQAGAIRLGIARALCELSPDNRRPLKVEGYLSRDPRAKERRKYGLKKARKA 127          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_PROMS (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain AS9601) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 69/119 (57.98%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  IK PL TLG E SYD+ V   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLIKINGRSGDDYLNFNPLHLNSIKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 130          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_PROMM (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 67/119 (56.30%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G+G   IN R    YL  NP +L  +K PL TLG    YDV V  HGGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:   11 WGTGRRKTSVARVRLVPGSGTITINGRPGDHYLNFNPAYLAAVKAPLQTLGLNEQYDVLVNVHGGGLTGQADAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 129          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_PROM0 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 69/119 (57.98%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  IK PL TLG E SYD++V   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLIKINGRAGDDYLNFNPLHLNSIKAPLQTLGLENSYDMYVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 130          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RR9_GRATL (30S ribosomal protein S9, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps9 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK +IARV L  G+GK IIN    + YLQ +P +L+    PL  LG    YD++VK  GGGL+GQA AI LG+ARAL  ++ D+R+ LK EG LTRD+R+ ERKK GL KARKA
Sbjct:   14 GTGRRKTSIARVKLVPGSGKLIINGLPGESYLQFSPNYLRVSYSPLKILGLNKEYDIYVKTEGGGLTGQANAIRLGLARALCRMNPDNRTTLKAEGFLTRDARIKERKKYGLRKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_PROMA (30S ribosomal protein S9 OS=Prochlorococcus marinus GN=rpsI PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.709e-28
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query:  250 AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            A   +GTGRRK ++ARV L  GTGK  IN R    YL  NP +L  +K PL TLG   +YDV V  +GGGL+GQ+ AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:    8 AVVYWGTGRRKTSVARVRLIPGTGKITINGRPGDHYLNFNPAYLSAVKAPLHTLGLGEAYDVLVNVYGGGLTGQSDAIKQGAARALCELSVDNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 130          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_SYNS9 (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9902) GN=rpsI PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 66/119 (55.46%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  T YDV V  HGGGL+GQ+ AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYIAAVKAPLETLGLSTEYDVLVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 127          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_SYNS3 (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9311) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 67/119 (56.30%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G   IN R    YL  NP +L  +K PL TLG  T YDV V   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKA
Sbjct:   11 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYLAAVKAPLQTLGLSTEYDVLVNVRGGGLTGQADAIKQGAARALCELSVDNRKPLKTEGHLSRDPRAKERRKYGLKKARKA 129          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_ACAM1 (30S ribosomal protein S9 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 68/118 (57.63%), Postives = 78/118 (66.10%), Query Frame = 1
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK +I RV L  G+G   IN +    YLQ NP ++   K PL +LG E  YDV V A GGGL+GQA AI LGVARAL  +  ++R PLK EG LTRD R  ERKK GL KARKA
Sbjct:   14 GTGRRKSSIVRVRLVPGSGVMTINGKPGDLYLQFNPSYIANAKAPLESLGLENDYDVLVNARGGGLTGQADAIKLGVARALCELDPENRKPLKLEGYLTRDPRAKERKKYGLRKARKA 131          
The following BLAST results are available for this feature:
BLAST of EY756771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PROM27.670e-2957.1430S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_GLOVI7.670e-2955.2830S ribosomal protein S9 OS=Gloeobacter violaceus ... [more]
RS9_PROMS1.002e-2857.9830S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROMM1.308e-2856.3030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM01.308e-2857.9830S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GRATL1.308e-2856.7830S ribosomal protein S9, chloroplastic OS=Gracila... [more]
RS9_PROMA1.709e-2855.2830S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_SYNS92.232e-2855.4630S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_SYNS33.806e-2856.3030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_ACAM13.806e-2857.6330S ribosomal protein S9 OS=Acaryochloris marina (... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-E02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756771 ID=EY756771; Name=EY756771; organism=Citrus sinensis; type=EST; length=879bp
CCACGCGTCCGGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTC
CCTTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCT
CATTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACC
CCAAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAAC
AACTGACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGG
CTCAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTC
GTCCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAA
GGAATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTT
TGGTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCAT
GGTGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCG
TGCATTGTTGAANGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAG
GCCTTCTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTC
CATAAAGCCCGCAAAGCCCACAGTATTCCAAACGGTGAGGCCAAAATTAC
AGTGTGATGGACTGTTACCCGNAGATCTATTTTCTGCTTGTATCTCCGAA
TAATATTATTATTATTAATTTTGGGTTAACATTTAAGGTTGGGAGTTTTG
GACTTCCAGTCCCGGGATCAAGGGATCAATAACAATTTTGGAAGAAGAGG
TAAAGTTGTCAAAATATTCCTTNNAAAAAAAANGGGCCAGAAATAGTNAA
AAAAAAAAGAAGGAGGGGGGCCGCCTAAA
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