EY756771

Overview
NameEY756771
Unique NameEY756771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756771_ssr704 microsatellite EY756771_ssr704:704..715. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRPI (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRDSR VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRP7 (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain 70585) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRDSR VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRP4 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRDSR VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRP2 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 67/118 (56.78%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRDSR VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_MYCPU (30S ribosomal protein S9 OS=Mycoplasma pulmonis GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            G GRRK ++ARV+L +G+GKF IN R+AKEYL+ + ++++    P        ++D+ V   GGGL+GQA AI LG+ARALL +S D+RS LK+  +LTR+++V ERKK GL KARKA
Sbjct:   14 GLGRRKSSVARVILLKGSGKFTINKREAKEYLKSD-IYIKDALQPFDLTQTNNTFDIRVTVRGGGLAGQAGAIRLGIARALLEISADYRSVLKEAKMLTRNTKVKERKKPGLRKARKA 130
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_MYCMO (30S ribosomal protein S9 OS=Mycoplasma mobile GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.016e-25
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            G GRRK + ARV+L+ G G+F+IN R A++YL  + L    ++ P+V    +  +D+ V   GGGLSGQA AI LG+ARALL VS D R  LK  G+LTRD+RV ERKK GL KARKA
Sbjct:    8 GLGRRKSSSARVILRPGKGEFLINKRVARDYLMSDILLKDALQ-PIVISDQKEKFDITVNVRGGGLSGQAGAIRLGIARALLEVSVDFRKNLKTAGMLTRDARVKERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRTD (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRD+R+VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRT2 (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRD+R+VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_STRT1 (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL V  D R  LK+ GLLTRD+R+VERKK GL KARKA
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKA 124
[Close]
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_GEOSW (30S ribosomal protein S9 OS=Geobacillus sp. (strain WCH70) GN=rpsI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK ++ARV L  G G+ +IN RD ++Y+    L ++ +K PLV      +YDV V   GGG SGQA AI  G+ARALL V  D+R  LK+ GLLTRD+RV ERKK GL  AR+A
Sbjct:    7 YGTGRRKSSVARVRLVPGDGRIVINDRDIRDYIPSEAL-IEVVKQPLVLTETLGNYDVLVNVKGGGFSGQAGAIRHGIARALLQVDPDYRPVLKRAGLLTRDARVKERKKYGLKGARRA 124
The following BLAST results are available for this feature:
BLAST of EY756771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STRPI3.016e-2556.7830S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP73.016e-2556.7830S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP43.016e-2556.7830S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_STRP23.016e-2556.7830S ribosomal protein S9 OS=Streptococcus pneumoni... [more]
RS9_MYCPU3.016e-2551.6930S ribosomal protein S9 OS=Mycoplasma pulmonis GN... [more]
RS9_MYCMO3.016e-2554.2430S ribosomal protein S9 OS=Mycoplasma mobile GN=r... [more]
RS9_STRTD3.939e-2555.9330S ribosomal protein S9 OS=Streptococcus thermoph... [more]
RS9_STRT23.939e-2555.9330S ribosomal protein S9 OS=Streptococcus thermoph... [more]
RS9_STRT13.939e-2555.9330S ribosomal protein S9 OS=Streptococcus thermoph... [more]
RS9_GEOSW3.939e-2552.9430S ribosomal protein S9 OS=Geobacillus sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-E02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756771 ID=EY756771; Name=EY756771; organism=Citrus sinensis; type=EST; length=879bp
CCACGCGTCCGGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTC
CCTTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCT
CATTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACC
CCAAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAAC
AACTGACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGG
CTCAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTC
GTCCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAA
GGAATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTT
TGGTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCAT
GGTGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCG
TGCATTGTTGAANGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAG
GCCTTCTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTC
CATAAAGCCCGCAAAGCCCACAGTATTCCAAACGGTGAGGCCAAAATTAC
AGTGTGATGGACTGTTACCCGNAGATCTATTTTCTGCTTGTATCTCCGAA
TAATATTATTATTATTAATTTTGGGTTAACATTTAAGGTTGGGAGTTTTG
GACTTCCAGTCCCGGGATCAAGGGATCAATAACAATTTTGGAAGAAGAGG
TAAAGTTGTCAAAATATTCCTTNNAAAAAAAANGGGCCAGAAATAGTNAA
AAAAAAAAGAAGGAGGGGGGCCGCCTAAA
back to top