EY756761

Overview
NameEY756761
Unique NameEY756761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = 2
Query:  176 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 535
            +I P +  Y+GG F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+             PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 39/140 (27.86%), Postives = 64/140 (45.71%), Query Frame = 2
Query:   98 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKK 517
            D+   P  G    L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F T+I+HPNV S+G +C++ L              + W P   ++            PN ES  N EA K   +R DD+ ++
Sbjct:   25 DMESTPPEGIKV-LINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 40/139 (28.78%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  101 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKK 517
            L  +PV G +A   D+ N+  + VTI GP  + YE G F   +  P +YP   P V+F T+I+HPN+   GR+C+ +L                W P   +             PN   P   + A++W       K K
Sbjct:   15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAK 139          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 2
Query:  179 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 538
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = 2
Query:  122 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 535
            G +    D  +I  ++++I  P D LY+   F   ++ PS YP  PP V   T ++HPN+  +G VC++IL              + WMPV  +             PN + P N +AA+   D +  F+  V + +R
Sbjct:   94 GCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILR-------------QDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLR 217          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 2
Query:  179 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 538
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 2
Query:  179 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 538
            + P ++ Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     +D+++ KV   ++R
Sbjct:   69 VSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 2
Query:  179 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 538
            + P ++ Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     +D+++ KV   ++R
Sbjct:   69 VSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of EY756761 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 40/133 (30.08%), Postives = 62/133 (46.62%), Query Frame = 2
Query:  143 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 538
            ++ + F+ +VT   P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   60 NKLHCFQLTVT---PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 182          
The following BLAST results are available for this feature:
BLAST of EY756761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBC12_XENLA4.395e-1132.50NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBE2S_DROGR5.741e-1127.86Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBC13_YEAST5.741e-1128.78Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2F_RAT7.497e-1130.58NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBC12_DICDI7.497e-1128.26NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UB2FA_MOUSE7.497e-1130.58NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_XENTR9.792e-1129.75NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA9.792e-1129.75NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBE2F_HUMAN9.792e-1130.08NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756761 ID=EY756761; Name=EY756761; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAGAGGTAGAGCCAATTCCAGCTCTCTCTCTCTACTAAAA
TCATGGCGGCATCTCAGGCAAGTCTCCTCTTGCAAAAACAACTAAAAGAT
CTTTGTAAGAACCCTGTTGCTGGGTTTTCTGCCGGGTTGGTGGATGAGAC
AAATATCTTTGAATGGAGTGTTACAATTATTGGACCACCTGATACTCTTT
ATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCATCAAACTACCCT
AATAGCCCACCTACAGTGAAGTTTACAACAGAGATTTGGCATCCTAATGT
CTATTCGGATGGGCGTGTCTGCATATCAATCCTTCATCCTCCAGGTGACG
ACCCTAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCTGTTCATACT
GTTGAAAGTATCGTTTTGAGTATCATATCAATGCTTTCCAGTCCTAATGA
TGAATCTCCTGCAAATGTCGAAGCTGCAAAAGAATGGAGAGACAGGAGAG
ATGACTTCAAGAAGAAAGTAGGCCGCTGTGTGAGAAGATCACAAGAAATG
TTGTAAACCAACTGCAGGCACTCTTTTTTTTCTCTACCTATGTGTTTGTA
CGGGAAATGTCTTGATTTAATTGTGTGGGGGGAACTGGGGTCTGTGGGTA
CTTGGTCTTGTGTAGACTGGCATTTTGAAAGTCTCTCAACATCTCTCTCG
TTTTCTCTGCATGGGTCAGTCACTGTAACGACTGGGAACATCCATGTATT
CAAAAAGCGTCTTTGGNTAGTTTTATCACAAATGTTCTGTCGTTCTCTAA
GGTCGTCTGAAGATTGCTCTACTCAGAATGGCTTGTGGTTTGATTCAAAA
GATTTCACCGTGATCTTTGCTGCTTTTGATCTTACCGAGCCACAAGCATT
AAT
back to top