EY756760

Overview
NameEY756760
Unique NameEY756760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAR 215
            AY+AG+  GTM  VL+AANE AV+ F+ EKI + +I   +  TC+ H   +  +P LEDI+  D WAR
Sbjct:  320 AYSAGKCSGTMPAVLNAANEMAVDQFLKEKISFQEIPIFINKTCESHLNKINLNPKLEDILEVDNWAR 387          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_CLOTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dxr PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            A+ A RAGGTM  VL+AANEKAV +F+ EKI +LDI +++E    +H   +   P ++DII  D WAR+
Sbjct:  308 AFEALRAGGTMPAVLNAANEKAVGLFLQEKIRFLDIPEIIEKVMGRH--SVKPDPDIDDIIDVDLWARK 374          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAA 227
            AY AGR GGTM  VL+AANE AV  F+D ++ + DI +VV  T ++H++     P L DI+  D WARE AA
Sbjct:  308 AYQAGREGGTMPCVLNAANEVAVSAFLDGRLAFTDIPRVVAATMEQHESK--RRPELGDILTADRWARETAA 377          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_EXIS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dxr PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    6 RPAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSS 245
            R A+ AGRAGG+M  VL+AANE+AV+ F+  +I +L+I   VE     H  + +  PSL+ I+  D WAR + A L  ++
Sbjct:  307 RLAFEAGRAGGSMPSVLNAANEQAVDRFLKGEISFLEIEASVEAALQAH--ENIEDPSLDQILESDRWARAFVASLSLAN 384          
The following BLAST results are available for this feature:
BLAST of EY756760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DXR_PROMP1.147e-1147.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOTH3.339e-1149.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP4.360e-1150.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EXIS27.438e-1142.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-D03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756760 ID=EY756760; Name=EY756760; organism=Citrus sinensis; type=EST; length=419bp
CCACGCGTCCGGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGA
GTTCTTAGTGCAGCTAACGAGAAAGCAGTAGAGATGTTCATTGATGAAAA
GATTGGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACGTGTGATAAGC
ACAAGGCGGACTTGGTAACCTCGCCTTCCCTAGAGGATATAATACATTAT
GATGCATGGGCACGAGAGTATGCAGCTGGTTTGCAATTTTCATCTGGTAG
AAGCCCTGTTCCAGCATGACTGCTTGCATTGATGCCCTACTTTGAGAACT
AGAGAGATGTGTTTACTTTTTGCCAAAAACTGGTATTCTCGTCAATGTTT
AAAGAGGCATCGAGCAATTGTACCATAAATAAATATAAGGTGGGGATTCA
GTATGTGTCCCCGATTTTN
back to top