EY756736

Overview
NameEY756736
Unique NameEY756736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756736 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 47/173 (27.17%), Postives = 73/173 (42.20%), Query Frame = 1 
Query:  265 LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAMEGTMNHCEVPPIEGETKICATSLESMLDFVHGTFGLETKFQVLSTKFLTKSTTIFQNYTILQVPKPMFAPQMVACHIMPYPYAIFYXHSQXTENXLFGVSLGG*YGDRV-EAVXVCHMDTSHWSRDHASXRVLGIEPG 780
            LPR    ++PFS   +  + + F   ++S +A  +   ++ CE P   GETK C  S E M+DF     G     +       +K   +      +         + V+CH   YPY ++Y HS           L     +++   V +CH+DTS WS  H +   LG  PG
Sbjct:  436 LPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGD---VTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPG 605
The following BLAST results are available for this feature:
BLAST of EY756736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
Y639_ARATH6.306e-1327.17Probable polygalacturonase non-catalytic subunit A... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756736 ID=EY756736; Name=EY756736; organism=Citrus sinensis; type=EST; length=923bp
CCACGCGTCCGAAAATACGTAAGAAACTTCGATAATAGAAAAGAGATGGG
GTTAAGATTTTCAGCTTGGAACCTCCTTCTTTCTCTACTCTTTCTGTGTG
CTCCGGTGCTTTCGGAGAATCTTCATGATTCTCATTCAATACCATCCCAC
ATGAATCACATGGACCCTTCAACGATGGTGTTCTTCACCTTGAAGGATCT
AAAGATTGGCGAAACGATGCCGATTTATTTTCGCAAGAGAGATCCCTCAG
CTTATCCTCAGGCTTTGCCTAGAGAAGAAGCAGATTCCATTCCATTTTCA
TTGAAACAACTGCCTTACCTTCTTCAATTCTTCTCGTTCTCAGATGACTC
ACCCCTAGCAAAAGCCATGGAAGGGACCATGAATCATTGCGAAGTTCCTC
CCATCGAAGGAGAAACCAAAATTTGTGCTACCTCTTTGGAATCCATGCTT
GATTTTGTACACGGAACTTTCGGATTGGAGACCAAATTCCAAGTTCTAAG
CACAAAATTTCTCACAAAATCAACTACCATTTTCCAAAATTACACTATTT
TACAAGTGCCTAAACCAATGTTTGCTCCCCAGATGGTGGCATGTCATATC
ATGCCTTACCCTTATGCAATCTTCTACTNGCACAGCCAANTGACTGAGAA
CNAGTTATTCGGTGTTTCATTAGGTGGNTGATATGGAGATAGAGTGGAAG
CTGTANCAGTTTGCCACATGGATACGTCTCATTGGAGTCGAGATCATGCA
TCGNTTCGTGTGCTTGGGATCGAGCCAGGGAGCTCCACGTCTGCCATTCN
TCCAGGCTGATAATATGNATACATTCAGCACCTACTACATGATTAAAATG
NATTGGAATGTGACGGGTAAAGCATATTCTAGCGATTATATTAATCTTGC
TGGNATAAATGATTTCGATTCTG
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