EY756735

Overview
NameEY756735
Unique NameEY756735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:535..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   20 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   57 HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   29 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 283
            +++KD K ++ G KP+ V+G R+P  I W   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN  +Y P+
Sbjct:   59 VEIKDGKLVIEG-KPIVVYGERDPANIQWGAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSADAPMFVCGVNLDKYDPK 142          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   20 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   57 HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.895e-15
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   41 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            + K L+   K + VF  R+P  IPW + G +YV++STGVFT               VII+APSKDAPMFVVGVN  EY P++
Sbjct:   62 EGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSKDAPMFVVGVNHEEYTPDI 143          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.781e-15
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   29 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            +K ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.781e-15
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 2
Query:   26 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            E+    D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:   58 EVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTPDL 143          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.938e-15
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 2
Query:   41 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 274
            D + L+   KP+  +  R+P  I W+ETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN  +Y
Sbjct:   62 DGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVFTTIDKAKAHLNGGAKKVIISAPSADAPMFVMGVNHKDY 139          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.938e-15
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   68 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            K +TVF  R+P  IPW + G +YV+ESTGVFT               V+I+APSKDAPMFVVGVNE +Y  +L
Sbjct:   71 KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKYTSDL 143          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 8.422e-15
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   20 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   44 HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYNNTL 131          
BLAST of EY756735 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.422e-15
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   20 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 286
            H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   55 HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
The following BLAST results are available for this feature:
BLAST of EY756735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
G3P_PONAB2.216e-1547.19Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_PHARH2.216e-1548.24Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_HUMAN2.216e-1547.19Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_PICAN2.895e-1547.56Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_RAT3.781e-1548.84Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_CANAL3.781e-1547.13Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_TRIAT4.938e-1550.00Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_PICPA4.938e-1552.05Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_SHEEP8.422e-1547.19Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_RABIT8.422e-1547.19Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756735 ID=EY756735; Name=EY756735; organism=Citrus sinensis; type=EST; length=286bp
CCACGCGTCCGAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGA
CCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCA
GAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGAC
TGGAGTCTTTACAGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTG
CTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTT
GTGGGTGTCAATGAGCACGAGTACAAACCAGAGCTC
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