EY756716

Overview
NameEY756716
Unique NameEY756716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG +N+I+E+DEV+IAG G   G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:   84 VTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.441e-14
Identity = 37/62 (59.68%), Postives = 51/62 (82.26%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG +N+I+E+DEV+IAG G   G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:   84 VTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.441e-14
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   84 VTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:   84 VTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   84 VTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG +NYI+E+DEV+I G G  +G ++GDIPGVR+KV+ V+GVSL AL+  KK+KP
Sbjct:   84 VTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 199
            + AF P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   84 VTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 196
            + AFVP DG +N+I+E+DEV+I G G   G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:   84 VTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 199
            + AF P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   84 VTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   14 IAAFVPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 199
            + AF P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   84 VTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
The following BLAST results are available for this feature:
BLAST of EY756716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS12_SULAC1.103e-1461.2930S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO1.441e-1459.6830S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_PYRIL1.441e-1461.2930S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_PYRCJ1.882e-1462.9030S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE1.882e-1461.2930S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_STAMF2.458e-1459.6830S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_THECE3.210e-1458.7330S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_SULSO3.210e-1458.0630S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_PYRKO3.210e-1458.7330S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_PYRHO3.210e-1458.7330S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756716 ID=EY756716; Name=EY756716; organism=Citrus sinensis; type=EST; length=398bp
CCACGCGTCCGAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACT
ACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGG
CATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGGTTTC
AGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGAT
CCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTAGCACT
TTATTTTCATTAATCCCTGTTGATTACTTTTTTCCTTTATCATGTATTGC
TGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAGTAAA
TTAGTATCTGTCTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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