EY756710

Overview
NameEY756710
Unique NameEY756710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 7.506e-25
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of EY756710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4X_MONDO7.506e-2563.2940S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_XENTR1.672e-2462.0340S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA1.672e-2462.0340S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CRIGR1.672e-2462.0340S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_CHICK1.672e-2462.0340S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_BOVIN1.672e-2462.0340S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4X_RAT1.672e-2462.0340S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE1.672e-2462.0340S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU1.672e-2462.0340S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU1.672e-2462.0340S ribosomal protein S4, X isoform OS=Macaca fusc... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756710 ID=EY756710; Name=EY756710; organism=Citrus sinensis; type=EST; length=527bp
CCACGCGTCCGGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTT
GGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCA
CATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGT
TCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAG
GGTATTAAACTATCCATCATTGAGGAGGCTAGGAAGAGACAAGCCCTGGC
GACTTCAGCAGCCGCCCAATGATAAACTTCATGGTCTTTGCGATATGGTT
TTAGAAAGTTTACTAGATGAAAGTTTTGCAGTTTGACACTTTTGTGATTG
CTTGTTTGATTTTCTTGTTGGTGATACTAGTTATCATAAAGTTTTGAGTT
TTAATACTGGTTTCAATTTTAGTTTTGTGATGAAACAGGTGACTCTTTTA
TTTTATCAGCGGCAATATTATTGGCAATGAATTTTTGGCCCAAAGTGACT
GACAAAAAAAAAAAAAAAAAAAAAAAA
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