EY756710

Overview
NameEY756710
Unique NameEY756710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.184e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG KP++SLPKGKG+KLSI EE  KR
Sbjct:  182 MITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.416e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  V MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.849e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  V MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.849e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T   VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.415e-23
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG K WVS+P+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.154e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++ EE  KR
Sbjct:  177 TGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.154e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T   VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
The following BLAST results are available for this feature:
BLAST of EY756710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4X_HUMAN1.672e-2462.0340S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA1.672e-2462.0340S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE1.672e-2462.0340S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_DROME2.184e-2468.9240S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_MACFU1.416e-2360.7640S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PONPY1.849e-2360.7640S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4B_SCHPO1.849e-2367.0940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4_ICTPU2.415e-2359.4940S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_HUMAN3.154e-2359.4940S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4C_SCHPO3.154e-2367.0940S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756710 ID=EY756710; Name=EY756710; organism=Citrus sinensis; type=EST; length=527bp
CCACGCGTCCGGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTT
GGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCA
CATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGT
TCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAG
GGTATTAAACTATCCATCATTGAGGAGGCTAGGAAGAGACAAGCCCTGGC
GACTTCAGCAGCCGCCCAATGATAAACTTCATGGTCTTTGCGATATGGTT
TTAGAAAGTTTACTAGATGAAAGTTTTGCAGTTTGACACTTTTGTGATTG
CTTGTTTGATTTTCTTGTTGGTGATACTAGTTATCATAAAGTTTTGAGTT
TTAATACTGGTTTCAATTTTAGTTTTGTGATGAAACAGGTGACTCTTTTA
TTTTATCAGCGGCAATATTATTGGCAATGAATTTTTGGCCCAAAGTGACT
GACAAAAAAAAAAAAAAAAAAAAAAAA
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