EY756710

Overview
NameEY756710
Unique NameEY756710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.154e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T   VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:  177 TSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.119e-23
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE  KR
Sbjct:  182 MITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.119e-23
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKGTK ++SLP+GKGI+L+I EE  KR
Sbjct:  182 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.379e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKGTK ++SLP+GKG++L+I EE  KR
Sbjct:  182 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.379e-23
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            V MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK TKP++SLP+GKGIKLS+ EE  +R
Sbjct:  180 VCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.379e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L++ EE  KR
Sbjct:  177 TGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.565e-22
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR
Sbjct:  177 TGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.565e-22
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR
Sbjct:  177 TGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKG+K +VSLP+GKG+KLSI EE  KR
Sbjct:  182 MITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  V MV GG N GRVG++ NRE+H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of EY756710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4A_SCHPO3.154e-2367.0940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_CARGR4.119e-2366.2240S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_BOMMO4.119e-2366.2240S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_SPOFR5.379e-2364.8640S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_IXOSC5.379e-2361.8440S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y1_GORGO5.379e-2358.2340S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y1_PANTR1.565e-2258.2340S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA1.565e-2258.2340S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4_LYSTE2.044e-2264.8640S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y2_PANTR2.044e-2258.2340S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756710 ID=EY756710; Name=EY756710; organism=Citrus sinensis; type=EST; length=527bp
CCACGCGTCCGGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTT
GGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCA
CATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGT
TCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAG
GGTATTAAACTATCCATCATTGAGGAGGCTAGGAAGAGACAAGCCCTGGC
GACTTCAGCAGCCGCCCAATGATAAACTTCATGGTCTTTGCGATATGGTT
TTAGAAAGTTTACTAGATGAAAGTTTTGCAGTTTGACACTTTTGTGATTG
CTTGTTTGATTTTCTTGTTGGTGATACTAGTTATCATAAAGTTTTGAGTT
TTAATACTGGTTTCAATTTTAGTTTTGTGATGAAACAGGTGACTCTTTTA
TTTTATCAGCGGCAATATTATTGGCAATGAATTTTTGGCCCAAAGTGACT
GACAAAAAAAAAAAAAAAAAAAAAAAA
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