EY756710

Overview
NameEY756710
Unique NameEY756710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 7.767e-22
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  V MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.730e-21
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            +VM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G K  +SLPKGKGIKLSI EE   R
Sbjct:  180 IVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEERDAR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.260e-21
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLPKGKGIKLSI EE  +R
Sbjct:  177 TGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.263e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R
Sbjct:  180 LVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.712e-19
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 3
Query:   21 VTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG K  VSLP G GI+LSI EE  KR
Sbjct:  182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.054e-18
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   18 MVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 227
            M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK ++ +VSLP GKG++ S ++E
Sbjct:  182 MIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            V  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++
Sbjct:  181 VCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256          
The following BLAST results are available for this feature:
BLAST of EY756710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4Y2_HUMAN7.767e-2258.2340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_YARLI1.730e-2163.1640S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_CANAL2.260e-2165.0040S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_YEAST3.263e-2059.2140S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_CAEEL4.712e-1964.3840S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_DICDI3.054e-1855.7140S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_TETTH9.826e-1748.6840S ribosomal protein S4 OS=Tetrahymena thermophil... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756710 ID=EY756710; Name=EY756710; organism=Citrus sinensis; type=EST; length=527bp
CCACGCGTCCGGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTT
GGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCA
CATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGT
TCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAG
GGTATTAAACTATCCATCATTGAGGAGGCTAGGAAGAGACAAGCCCTGGC
GACTTCAGCAGCCGCCCAATGATAAACTTCATGGTCTTTGCGATATGGTT
TTAGAAAGTTTACTAGATGAAAGTTTTGCAGTTTGACACTTTTGTGATTG
CTTGTTTGATTTTCTTGTTGGTGATACTAGTTATCATAAAGTTTTGAGTT
TTAATACTGGTTTCAATTTTAGTTTTGTGATGAAACAGGTGACTCTTTTA
TTTTATCAGCGGCAATATTATTGGCAATGAATTTTTGGCCCAAAGTGACT
GACAAAAAAAAAAAAAAAAAAAAAAAA
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