EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13348 contig Csv1_Contig13348:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP4 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapF PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.485e-45
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KY GLGNDFIL+DNRN   P ++PEQA  +CDR+FG+GADGVIF +P    TDYTMRIFNSDGSEPEMCGNG+RC ARF A+LE   L     + +HT AG I P+   DG+V VDMG+P L A ++P  L    +  V    L V G  W+VT
Sbjct:    3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTMRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTVDMGQPRLLAGEIPTTLKPAAE-KVIAQPLQVGGRSWSVT 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP8 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801) GN=dapF PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.944e-45
Identity = 93/158 (58.86%), Postives = 111/158 (70.25%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE--NLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F KY GLGNDFIL+DNR+S  P +SPEQA K+CDR+FGIGADGVIF +PG   TDYTMRIFNSDGSEP+MCGNG+RC ARFIA LE     GK ++ + T AG+I P     G+VKVDMG P L A ++P  L  N +  V    L+V G  W VT
Sbjct:    3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTMRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGK-TYQIDTLAGVISPRLEAQGQVKVDMGTPYLLAKEIPTTL-GNSNDKVINHSLEVAGQTWLVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACAM1 (Diaminopimelate epimerase OS=Acaryochloris marina (strain MBIC 11017) GN=dapF PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.259e-44
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F KY GLGNDFIL+DNR+  +P ++P+QA ++CDRNFGIG DGVIFA+P    TDYTMRI+NSDGSEPEMCGNG+RC ARF+A LE   L    ++ +HT AG I P    DG VKVDMG P L   ++P  L    D  V    L+V G  W VT
Sbjct:    3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKVDMGPPFLVPQEIPTTLGEGTD-PVVNQPLEVAGQSWPVT 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.497e-43
Identity = 88/158 (55.70%), Postives = 110/158 (69.62%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F KYHGLGNDFIL+DNR+ +EP +SPE A ++CDR+FGIGADGVIF +PG + TDY MRIFNSDGSEPEMCGNG+RC A+FIAELE     GK S+ + T  GL+ P      +V VDMG P L  S++P  L  ++   V    ++V G  W VT
Sbjct:    3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQMRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGK-SYRIDTLGGLMTPRLEAQEQVTVDMGLPRLLGSEIPTTL-VSRTEKVIDQPIEVAGQSWLVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_MICAN (Diaminopimelate epimerase OS=Microcystis aeruginosa (strain NIES-843) GN=dapF PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.564e-43
Identity = 89/155 (57.42%), Postives = 109/155 (70.32%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            F KY GLGNDFIL+DNR+S EP I+ E A  +CDR+FGIGADGVIFA+PG   TDYTMRIFNSDGSEPEMCGNG+RC A+FIA LE  N   +++ +HT AG I+P    + +V VDMG P L  S++P  L    +  V    L+V+G  W VT
Sbjct:    5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGPPQLLGSEIPTTLVKGSE-KVLAVPLEVEGKDWLVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJA (Diaminopimelate epimerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dapF PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.338e-41
Identity = 84/156 (53.85%), Postives = 106/156 (67.95%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KY GLGNDFILVDNR+  +P ++PE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT AG IVP+   DG V VDMG P L A  +P  L A  +  V +  L V G +W VT
Sbjct:    5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTVDMGIPRLLAGQIPTTL-AKPEEKVVRQPLQVGGREWAVT 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJB (Diaminopimelate epimerase OS=Synechococcus sp. GN=dapF PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.987e-41
Identity = 85/156 (54.49%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KY GLGNDFILVDNR  ++P +SPE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT AG IVP+   DG V VDMG P L A  +P  L    D  V +  L V G +W VT
Sbjct:    5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVTVDMGIPRLLAKQIPTTL-VEPDEKVIRQPLAVAGREWRVT 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_THEEB (Diaminopimelate epimerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.734e-36
Identity = 80/158 (50.63%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ--SFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KY GLGNDF+L+DNR+  E  ++PEQA   CDR+FG+GADGVIF + G   +DY MR++N+DGS  +MCGNG+RC A+FI  LE  +  +   + + T AGLIVPE   DG+V VDMG+P L A  +P  L+A  D  V    L V   +W VT
Sbjct:    3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRMRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTVDMGKPRLLAQQIPTTLAA-ADQKVVDVPLTVGDRQWLVT 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PROMM (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapF PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.402e-30
Identity = 67/138 (48.55%), Postives = 90/138 (65.22%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNS--TEPRISPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLS 818
            L F KY GLGNDF+L+D R    T+  I+P+ A   K+CDR+FGIGADG+I A+P     D  M+IFN+DGS  EMCGNG+RC  RF+A++E     Q + + T AG+I P   +DG++ VDMG P L    +P  L+
Sbjct:    5 LQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQICVDMGTPFLDPESIPTTLT 142          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_DESHD (Diaminopimelate epimerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dapF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.019e-28
Identity = 72/162 (44.44%), Postives = 96/162 (59.26%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRIS--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGK----VKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            +  VK HGLGNDF+ +D+       +   PE A KLC R FG+G DG+I  +P  +  D  MRI NSDGSEPEMCGNG+RCFAR+I + +    +    V T AG++  + S  G     V+VDMGEPILK+  VP  +  +    V  + LDVDG ++  T
Sbjct:    1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADARMRILNSDGSEPEMCGNGIRCFARYIYD-QGYVSQNPLQVETLAGILTLQLSITGDQVTGVRVDMGEPILKSEQVPVLIQGD---PVVGARLDVDGQEFEFT 157          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_CYAP43.485e-4556.33Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_CYAP85.944e-4558.86Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_ACAM12.259e-4455.70Diaminopimelate epimerase OS=Acaryochloris marina ... [more]
DAPF_CYAP72.497e-4355.70Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_MICAN5.564e-4357.42Diaminopimelate epimerase OS=Microcystis aeruginos... [more]
DAPF_SYNJA2.338e-4153.85Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNJB3.987e-4154.49Diaminopimelate epimerase OS=Synechococcus sp. GN=... [more]
DAPF_THEEB1.734e-3650.63Diaminopimelate epimerase OS=Thermosynechococcus e... [more]
DAPF_PROMM5.402e-3048.55Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_DESHD1.019e-2844.44Diaminopimelate epimerase OS=Desulfitobacterium ha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
back to top