EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            + F K HGLGNDF+++D   +    ++PE    L DRN GIG D ++   P +    D+  RIFNSDGSE E CGNG RCFARF+ +   L+ KQ   V T +G++     + G V+VDMG+P  + +++P+
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV-QARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMGKPRFEPAEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 62/151 (41.06%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D   S    I P+ A    DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T  G+I  +  +DG++ V+MG P L  +D+P++            ++DVDG
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVNMGAPRLVPADIPFQ----APEQALSYQVDVDG 147          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEP-RISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK---LSANKDXSVXKSELDVDG-VKW 875
            L F K HG GNDF+++D    T+P  ++P Q   L DR+FG+GAD ++    P V G D+  RIFN DG E E CGNG RCF +F+ E   L  ++S  V    G I     ++G+V VDMG P+     VP+    L   ++ +     LDV G  +W
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRE-RGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRW 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            LHF K HG GNDF+++D    T    +PEQ A + DR+FG+GAD ++          D+  RIFN DG E E CGNG RCF +F+ +   L  K++  V    G+      DDG+V VDMG P+ +A+ +P+
Sbjct:    3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGAPVFEAARLPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_METM6 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPENSDDGKVKVDMGEPILKASDVP 806
            + F K HGLGND+I VD    ++   +P + ++ + DR+FGIG+DG++  +P  +  D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T AG+    +  EN     VKVDMGEPILKA  +P
Sbjct:    1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISRFVSDRHFGIGSDGLVLILPS-DLADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENDKVVLVKVDMGEPILKAETIP 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BURP8 (Diaminopimelate epimerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEP-RISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLS---ANKDXSVXKSELDVDG-VKW 875
            L F K HG GNDF+++D    T+P  ++  Q   L +R+FG+GAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K+S  V    G+I     D+G+V VDMG P+ +   VP+  S   A ++ +     L+V+G  +W
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMGAPVFEPVQVPFDASGVEARREGNDTLYALEVNGETRW 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_META3 (Diaminopimelate epimerase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.353e-23
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISP--EQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP----ENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSE 851
            L+F K HGLGND+I+++  +  + +     E + K+C R F IGADGVIF  P  +   D   RIFNSDGSE EMCGNG+RCF++F+   E +  K    V T  GL V     EN+    +KV MG P  +  D+P  +    +  V   E
Sbjct:    3 LNFTKMHGLGNDYIVINEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYDIRFRIFNSDGSEAEMCGNGIRCFSKFV--YERVMQKNPLNVETMGGLRVSEMNIENNIVKSIKVFMGAPTFELKDIPMVVEGKSENDVFLDE 152          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_THISH (Diaminopimelate epimerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.425e-22
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN--GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNV 881
            + F K HGLGNDF+++D  +     +SP+Q   L  R FG+G D V+      +    D+  RIFN+DG+E E CGNG RCFA F+ E   L  K    V T AG+I  +   DG+V VDMG P LK   +P++     + ++    L+V+G  + +
Sbjct:    3 IQFSKMHGLGNDFVVIDAIHQPVD-LSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFRYRIFNADGNEVEQCGNGARCFAVFVRE-RGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMGPPRLKPWQIPFE----AESAMTSYPLEVEGETYEI 153          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.425e-22
Identity = 61/151 (40.40%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T +G+I  +   DG++ VDMG P     ++P++ +           +DVDG
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVDMGPPRFVPEEIPFEAAEQATCYT----VDVDG 147          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAE (Diaminopimelate epimerase OS=Pseudomonas aeruginosa GN=dapF PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.425e-22
Identity = 61/151 (40.40%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D   S    + P+      DRN GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+S  V T  G+I      DG+V VDMG P L  +++P++     +      E++V+G
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVETKGGIIELNIRPDGQVTVDMGPPRLAPAEIPFQ----AEREALSYEIEVNG 147          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_PSYWF4.897e-2342.42Diaminopimelate epimerase OS=Psychrobacter sp. (st... [more]
DAPF_PSEPF4.897e-2341.06Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_BURXL4.897e-2339.62Diaminopimelate epimerase OS=Burkholderia xenovora... [more]
DAPF_RALPJ6.395e-2341.67Diaminopimelate epimerase OS=Ralstonia pickettii (... [more]
DAPF_METM66.395e-2343.70Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_BURP86.395e-2338.99Diaminopimelate epimerase OS=Burkholderia phymatum... [more]
DAPF_META38.353e-2340.79Diaminopimelate epimerase OS=Methanococcus aeolicu... [more]
DAPF_THISH1.425e-2238.22Diaminopimelate epimerase OS=Thioalkalivibrio sp. ... [more]
DAPF_PSEU21.425e-2240.40Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSEAE1.425e-2240.40Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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