EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.019e-28
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVD---NRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVP 806
            + F+K HGLGNDF++VD   N+N     +S + A K+CDR FGIGADG++  +P     D+ MRI NSDGSE EMCGN +RC AR+  E  N   K+   V T AG+I PE  ++  V+VDMG PILK  ++P
Sbjct:    1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPSEKA-DFKMRIINSDGSEAEMCGNAIRCVARYYVEKYN-PAKKQLEVETLAGIIKPEVLENNMVRVDMGRPILKPQEIP 130          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_MOOTA (Diaminopimelate epimerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dapF PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.056e-28
Identity = 71/160 (44.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP----ENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            +HFVK HGLGNDF+LV+      P   P  A ++C R FGIGADG+I  +P        MRIFN DGSEPEMCGNG+RCFAR++ E     G++   V T AG+I P    E      V+VDMG P L+   +P    A     V    ++V+G  W  T
Sbjct:    1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQAR-LRMRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEE-LQVETLAGIIKPRLILEGGRVAGVRVDMGAPHLEREQIP---MAGTGSPVLDEPIEVNGETWRGT 155          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.471e-27
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQ--AAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--NSDDGKVK---VDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L+F K  GLGNDF+++D+RN    +  P    A KLC R FG+G DG+I  +      D   +IFN DGSEPEMCGNG+RCFA+ + E + +  KQ FTV T AG I+PE   SD  +V+   VDMGEPIL+   +P+K   N+  +V   ++ V G   ++T
Sbjct:    3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETA-DVGFKIFNPDGSEPEMCGNGMRCFAKLVFE-QGIVTKQRFTVETLAGTIIPEILLSDTRQVEAICVDMGEPILEPDRIPFK--CNRQRAV-NEQIQVKGETVSIT 160          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_THETN (Diaminopimelate epimerase OS=Thermoanaerobacter tengcongensis GN=dapF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 69/141 (48.94%), Postives = 89/141 (63.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP----ENSDDGKVKVDMGEPILKASDVPYKLSANK 827
            + F K HGLGNDFI+++   + E     E A KLCDR+FGIGADG++   P  +  D  MRIFN+DGSE EMCGNG RCFA+++ E + +  KQ  TV T AG+I+P    EN     VKV MG PI ++S +P K    K
Sbjct:    1 MRFTKMHGLGNDFIVIE---AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIKMRIFNADGSEAEMCGNGSRCFAKYVYE-KGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVYMGSPIFESSKIPVKSEKQK 136          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSE (Diaminopimelate epimerase OS=Azoarcus sp. (strain EbN1) GN=dapF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 67/152 (44.08%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDN-RNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D  R S +  ++PEQ  +L DR+FGIG D ++          D+  RIFN+DG E E CGNG RCF RF+ E + L  K+   V T +G+I P+  DDG V VDMG P+L+ + VP+      D       LDV G
Sbjct:    3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMGVPVLEPARVPFV----SDSDAIVQPLDVGG 147          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.277e-27
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  420 HFVKYHGLGNDFILVDNRNSTEPRISPEQAAK----LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSAN 824
            +F KY GLGNDFI+ D R++    +  +        LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG+RC   F+ +   +N      + T AGLI+     +  +KV+MGEPIL   D+P KL  N
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIKVNMGEPILSPLDIPTKLLMN 142          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.277e-27
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  420 HFVKYHGLGNDFILVDNRNSTEPRISPEQAAK----LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSAN 824
            +F KY GLGNDFI+ D R++    +  +        LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG+RC   F+ +   +N      + T AGLI+     +  +KV+MGEPIL   D+P KL  N
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIKVNMGEPILSPLDIPTKLLMN 142          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_LARHH (Diaminopimelate epimerase OS=Laribacter hongkongensis (strain HLHK9) GN=dapF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 71/158 (44.94%), Postives = 94/158 (59.49%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVTL 887
            L F K  GLGNDF ++D    T  R++PEQ  KL DR FGIG D ++   P  + G D++ RIFN DG E E CGNG RCFARF+ +   L  ++   V T  G+IVP  +DDG V VDMG P  + +D+P+   A +D  +   EL+V G    VT+
Sbjct:    3 LKFTKMQGLGNDFAVLDGVRQTI-RLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSYRIFNCDGGEVEQCGNGARCFARFVFD-HGLTDRREIRVETARGVIVPRLADDGLVTVDMGPPRFRPADIPF--VAAEDAVI--HELEVAGQILGVTV 154          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PELTS (Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDN-RNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-NSDDGK---VKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            +HF K HGLGNDFILVD  +    P   P  A K+CDR+FG+GADG++  +P  +  D +MRIFN DGSE EMCGN +RC A+++ E   +       V T AG+++PE   ++G+   V+VDMGEP L+ S++P +        V    L+  G  + +T
Sbjct:    1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA-DVSMRIFNPDGSEAEMCGNAIRCVAKYLYE-RGMVKADRIRVETLAGVMIPELLVEEGRVRLVRVDMGEPRLERSEIPME---GPPGRVLGEPLETGGAVYRIT 156          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-NSDDGK---VKVDMGEPILKASDVPYKLSANKDXSVXKSE-LDVDGVKWNVT 884
            + F K HGLGND+I V+    T    S E A K+ DR+FGIG+DG++  MP     D+ MR+FNSDGSE EMCGN +RC  +++ +   +  K    V T AG+ V E    DGK   VKVDMGEPILK  ++P     N D  + ++E +++DG ++ VT
Sbjct:    1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPSERA-DFKMRMFNSDGSEAEMCGNAIRCVGKYVFD-RGMTNKNVIRVETLAGIKVLELTVQDGKAKLVKVDMGEPILKPENIP----VNSDKEIFRTEPVEIDGKEFKVT 154          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_CARHZ1.019e-2849.62Diaminopimelate epimerase OS=Carboxydothermus hydr... [more]
DAPF_MOOTA5.056e-2844.38Diaminopimelate epimerase OS=Moorella thermoacetic... [more]
DAPF_DESAH1.471e-2744.79Diaminopimelate epimerase OS=Desulfobacterium auto... [more]
DAPF_THETN2.509e-2748.94Diaminopimelate epimerase OS=Thermoanaerobacter te... [more]
DAPF_AZOSE2.509e-2744.08Diaminopimelate epimerase OS=Azoarcus sp. (strain ... [more]
DAPF_PROMT3.277e-2744.60Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_PROM13.277e-2744.60Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_LARHH4.280e-2744.94Diaminopimelate epimerase OS=Laribacter hongkongen... [more]
DAPF_PELTS7.300e-2742.24Diaminopimelate epimerase OS=Pelotomaculum thermop... [more]
DAPF_CLOTH1.626e-2644.10Diaminopimelate epimerase OS=Clostridium thermocel... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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