EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BACV8 (Diaminopimelate epimerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPIL 788
            + F K  G GND+I V+  +S  P   P +AA K    + GIGADG++  +      D++MRIFN+DGSE  MCGN  RC  +++ E          LE L+G +   +HTG G++         V VDMG P+L
Sbjct:    5 IKFTKMQGTGNDYIYVNTLSS--PLQDPIKAARKWSTYHTGIGADGLVL-IGASEKADFSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVV-------KDVTVDMGTPLL 129          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_COREF (Diaminopimelate epimerase OS=Corynebacterium efficiens GN=dapF PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAM---------PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG----LIVPENSDDGKVKVDMG 776
            F K H   NDFI++ + + T   ++ ++  +LCDR  G+GADGV+  +         PGV+   + M   N+DGS  EMCGNGVR FA ++A    L     FT+ T AG     ++  + DD  V+VDMG
Sbjct:    7 FAKGHATENDFIIIHDPDGTID-LTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLA-AHQLVDTTDFTIGTRAGARSVTVLSADRDDAVVRVDMG 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RICPR (Diaminopimelate epimerase OS=Rickettsia prowazekii GN=dapF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMG 776
            ++FVK HGLGNDF++V+ R+          A  + DR+ GIG D  I      N   YTM I+N DGS  ++CGN +RC A+ I  L+   GKQ+ TV  G   ++       K+ V++G
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEE--NNDFYTMIIYNIDGSSAKLCGNAIRCLAKLI-YLD--TGKQNITVMVGKKKLLCNVKAANKISVNVG 119          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BRUME (Diaminopimelate epimerase OS=Brucella melitensis GN=dapF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVD 863
            F + +GLGN  I+ D R   +  I+   A +L   +       +    P   GTDY + I N DG++ + CGNG RC  + +A      G+ +FT  T AG++     DDG + VDMG P     D+P    A       K EL VD
Sbjct:    7 FARMNGLGNQIIVADMRGRADS-ITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCDGTQAQACGNGTRCVVQALAA---ETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDIPL---AQAVADTRKIELQVD 146          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_STRCO (Diaminopimelate epimerase OS=Streptomyces coelicolor GN=dapF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.256e-14
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  423 FVKYHGLGNDFILV-DNRNSTEPRISPEQAAKLCDRNFGIGADGVIF-----AMPGVNG----TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDV 803
            F+K HG  NDF++V D  N+ +  + P   A LCDR  G+G DG++      A P   G     ++ M   N DGS  EMCGNGVR FAR++    ++  +    V T  G+     + +G V V MG  +L A DV
Sbjct:    7 FLKGHGTENDFVIVPDPENALD--LPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEARGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVT-EGDLAVATRGGVKTVHIAKNGDVTVGMGRALLPAGDV 140          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CORGB (Diaminopimelate epimerase OS=Corynebacterium glutamicum (strain R) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPG-------VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPENSDDGKVKVDMGEP 782
            F K H   NDFI++ + ++    ++PE   KLCDR  GIGADG++  +         V+ + + M   N+DGS  EMCGNGVR FA ++    +L    SF + T AG+    I+  +    +V+VDMG P
Sbjct:    7 FAKGHATENDFIIIPDEDARLD-LTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYS-RSLVDNTSFDIGTRAGVRHVDILQADQHSAQVRVDMGIP 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BACFR (Diaminopimelate epimerase OS=Bacteroides fragilis GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGK----VKVDMGEPI 785
            + F K HG GND+I V+      P   PE+AA +    + GIG+DG++  +   +  D++MRIFN+DGSE  MCGN  RC  +++ E   L  K   T+ T +G+ + E   +G+    V VDMG P+
Sbjct:    5 IQFTKMHGTGNDYIYVNTLRF--PIARPEKAAIEWSAYHTGIGSDGLVL-IGHSDKADFSMRIFNADGSEAMMCGNASRCIGKYLYEY-GLTSKNVITLDTLSGIKILELHLEGRTVETVTVDMGVPL 128          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_MESSB (Diaminopimelate epimerase OS=Mesorhizobium sp. (strain BNC1) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 51/146 (34.93%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDV 860
            F K +GLGN  I+ D R   + R+ PE A +L           +    P + GT+  + I NSDGS  + CGNG+RC    +  L    G+ SFT  T AG++  E   +G + VDMG+P     D+P    A +     K EL V
Sbjct:    7 FAKMNGLGNAIIVADMRGRAD-RVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEIINSDGSVAQACGNGMRC---VVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFGWQDIPL---AEEFHDTRKIELQV 145          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CAMJ8 (Diaminopimelate epimerase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGE 779
            + F KY   GNDF++  N +  E R +   A +LC+R  GIGADG I  +P     D+    +N+DGS   MCGNG R  A F+  +  +N   SF   TGAG+I  + + D KV+V +G+
Sbjct:    1 MKFYKYCASGNDFVIT-NADRKEDRSA--LAKELCNRYEGIGADGFIVILPHEK-YDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFL--TGAGVIKAKVNQD-KVEVSLGK 114          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BARBK (Diaminopimelate epimerase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVP 806
            F K +GLGN  I+ D R +    I+P QA +    N     D ++   P     D+ + I+N+DGS  + CGNG RC   ++A   N N   +F + T  G++  +   DG + VDMG P L A D+P
Sbjct:    5 FSKMNGLGNKIIVADLRKAIH-NITP-QAIQALASNPQTHFDQIMAIHPPTQDADFRIEIWNADGSMAKACGNGTRCVIEWLA---NHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLNAKDMP 127          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_BACV81.865e-1438.52Diaminopimelate epimerase OS=Bacteroides vulgatus ... [more]
DAPF_COREF2.436e-1438.17Diaminopimelate epimerase OS=Corynebacterium effic... [more]
DAPF_RICPR7.087e-1438.33Diaminopimelate epimerase OS=Rickettsia prowazekii... [more]
DAPF_BRUME7.087e-1433.33Diaminopimelate epimerase OS=Brucella melitensis G... [more]
DAPF_STRCO9.256e-1437.23Diaminopimelate epimerase OS=Streptomyces coelicol... [more]
DAPF_CORGB1.209e-1337.40Diaminopimelate epimerase OS=Corynebacterium gluta... [more]
DAPF_BACFR1.579e-1338.28Diaminopimelate epimerase OS=Bacteroides fragilis ... [more]
DAPF_MESSB2.062e-1334.93Diaminopimelate epimerase OS=Mesorhizobium sp. (st... [more]
DAPF_CAMJ82.062e-1339.67Diaminopimelate epimerase OS=Campylobacter jejuni ... [more]
DAPF_BARBK2.062e-1335.16Diaminopimelate epimerase OS=Bartonella bacillifor... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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