EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 68/160 (42.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE----NSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNV 881
            L F K HG GNDFI+V+  N  +   S + A +LC R+F IGADG+I  +P  +   D+ MRIFN+DGSE EMCGNG+RCFA ++ E  NL  +    + T AG+I PE    N D   +KV+MG P  K+ ++P  +    D  V    L +   K N+
Sbjct:    3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFRMRIFNADGSEAEMCGNGIRCFAHYLRE-NNLTTRDVLKIETLAGIITPEIVSYNGDKSLIKVNMGRPHFKSEEIPVNIEDELDY-VKNFPLKIGNKKLNI 159          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BURVG (Diaminopimelate epimerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dapF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK---LSANKDXSVXKSELDVDG-VKWNVTL 887
            L F K HG GNDF+++D  + T P ++  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K+S  V    GLI     D+G+V VDMG P+ + + VP+    L    D +     LDV G  +W  T+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVTD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTV 163          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 69/161 (42.86%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--NSDDGKVK---VDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            ++F K  G+GND++ +D     + R+SPEQ  KL DRNFGIG DGVIF +   N  ++ M ++NSDGS  EMCGNGVRC  +F+ +   L   Q  T+ TG G++  +     +GKV+   VDMGEPILK S VP  +    D  V    ++V G +++ T
Sbjct:    3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQMDMYNSDGSSSEMCGNGVRCVGKFVYD-HGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVTVDMGEPILKPSLVP--IVWKGDEPVINQVIEVQGKQYHFT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEFN (Diaminopimelate epimerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dapF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            +HF K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G I      DG V V+MG P+++ S +P+K
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVSTNSGKITLRIERDGNVTVNMGVPVIEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAA--KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSV 839
            + FVKY GLGNDFIL+D     + +I    A   KLCDR+FGIGADG+I   P  +  DY +RI NSDG+EPEMCGNG+RC  RF+   + +  ++  T  T AG I  E   +  VKVDMG P L A+ +P  +S +   +V
Sbjct:    1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPSASA-DYKIRIINSDGTEPEMCGNGIRCAMRFV--FDYIKPQRKLTFETLAGPIKTELLAENLVKVDMGAPKLTAAQIPLNISDSDGRAV 137          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_HAHCH (Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396) GN=dapF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.072e-26
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F K HGLGNDF++VD   S      PEQ  +L DRNFG+G D ++   P G    D+  RIFN+DGSE E CGNG RCFARF+ E   L  K++  V T  G+I    + DG V VDMG P L  +D+P+     +        ++V+GV + ++
Sbjct:    3 IKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFRYRIFNADGSEVEQCGNGARCFARFVKE-NRLTNKKNIRVETKKGIIELIVNKDGLVTVDMGAPRLAPADIPFVAETQEAI----YPIEVNGVMYEIS 153          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            +HF K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+ + + L  KQ   V T +G +      DG V V+MG P+L+ S +P+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-YFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV-KSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMGIPVLEPSRIPF 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            +HF K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T AG +      DG V V+MG PIL  + +P+K
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMGVPILDPAQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVP 806
            L F K HGLGNDF+++D   S    I+PE+A +L DR+FG+G D V+    P     D+  RIFN DGSE E CGNG RCFA F+ +   L  K   TV T  G +V    +D +V VDMG PIL  +D+P
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKYRIFNHDGSEVENCGNGARCFAVFVRQ-RGLTAKSVITVETAVGRMVLHVQEDDQVTVDMGAPILSPADIP 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 61/132 (46.21%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF+++D   S +  I+PE+A KL DR+FG+G D V+    P     D+  RIFN+DGSE E CGNG RCFA F+ +   L  K    V T AGL+     DD +V V+MG P+L  + +P+
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRYRIFNNDGSEVENCGNGARCFAVFVRQ-RQLTAKSDIVVETAAGLLRLHVLDDNQVTVNMGVPVLAPAQIPF 132          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_HALOH2.124e-2642.50Diaminopimelate epimerase OS=Halothermothrix oreni... [more]
DAPF_BURVG2.774e-2641.36Diaminopimelate epimerase OS=Burkholderia vietnami... [more]
DAPF_LEPBA3.623e-2642.86Diaminopimelate epimerase OS=Leptospira biflexa se... [more]
DAPF_SHEFN6.180e-2646.62Diaminopimelate epimerase OS=Shewanella frigidimar... [more]
DAPF_ELUMP6.180e-2646.85Diaminopimelate epimerase OS=Elusimicrobium minutu... [more]
DAPF_HAHCH8.072e-2642.04Diaminopimelate epimerase OS=Hahella chejuensis (s... [more]
DAPF_SHELP1.798e-2546.97Diaminopimelate epimerase OS=Shewanella loihica (s... [more]
DAPF_SHEAM1.798e-2547.37Diaminopimelate epimerase OS=Shewanella amazonensi... [more]
DAPF_SACD21.798e-2547.33Diaminopimelate epimerase OS=Saccharophagus degrad... [more]
DAPF_TERTT2.348e-2546.21Diaminopimelate epimerase OS=Teredinibacter turner... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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