EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPA (Diaminopimelate epimerase OS=Rhodopseudomonas palustris GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-VPENSDDGKVKVDMGEPILKASDVP 806
            F K +G+GN+ ++VD R+   P ++P  A  +      +  D ++   P  ++GT+  +RI+N+DGSE   CGNG+RC AR   ++ + + K   T  T AGL+       DG   VDMGEP     D+P
Sbjct:    9 FAKMNGIGNEIVVVDLRDQPAP-VTPADARAVAAH---VPYDQLMLLQPARLSGTEAFVRIYNNDGSESGACGNGMRCVAR---QMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFGWQDIP 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_MYCA1 (Diaminopimelate epimerase OS=Mycobacterium avium (strain 104) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 50/140 (35.71%), Postives = 68/140 (48.57%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP---------------GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG----LIVPENSDDGKVKVDMGE 779
            + F K HG  NDF+L+ +    E R++    A LCDR  G+GADGV+                   GV G D+ M   NSDGS  +MCGNGVR FA ++     L  +  F V + AG     +   ++    V VDMG+
Sbjct:    1 MKFAKGHGTENDFVLLCD-TPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVLDRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYL-RASGLETRDEFVVGSLAGPRPVTVHAADATGADVSVDMGK 138          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CLAM3 (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE--LENLNGKQSFTVHTGAGLIVPENS------DDGKVKVDMGEPILKASDV 803
            L F K  G GNDF+L  +  + E  ++  Q   LCDR+FGIGADG I A+                  ++ M   N DGS  EMCGNG+R F  F+ E  L  L   ++  + T AG+   + S      D G+ ++  GEP+++A D+
Sbjct:    4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAALEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGVRDVQRSGSGFQVDLGRWELAGGEPLVRAKDL 151          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BUCAP (Diaminopimelate epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 43/139 (30.94%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  390 FLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDV 803
            F + ++   ++F K HGLGNDF+++++    +  ++      L +RN G+G D ++      N   D+  RIFN++G+E E CGNG RC   F+  L+ L  K+   + T    I  +   D  ++V+M EP  K  ++
Sbjct:    2 FSNYKKKKKIYFSKMHGLGNDFMVIESIKQ-DFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNANGNEVEQCGNGARCVGLFLF-LKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKLEEI 138          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RICTY (Diaminopimelate epimerase OS=Rickettsia typhi GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMG 776
            ++FVK HGLGNDF++V  R+        + A  + DR+ GIG D  I      N   YTM I+N DGS  ++CGN  RC A+ I  L+   GK+  T+  G   ++       K+ V++G
Sbjct:    5 INFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNN--VYTMIIYNIDGSNAKLCGNATRCLAKLI-YLD--TGKKDITIMVGKKKLLCNVEAANKISVNVG 119          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_METPB (Diaminopimelate epimerase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE---LENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVP 806
            F+K HG GN  +++D R  T  R++P +A  +           ++   P   GTD  MRI+N+DGSE   CGNG RC    + +   +         T+ T AGL+  +   D    VDMG+P L+  ++P
Sbjct:    9 FLKMHGAGNAIVVLDLRG-TSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDMGQPRLRWDEIP 138          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RHOPT (Diaminopimelate epimerase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-VPENSDDGKVKVDMGEPILKASDVP 806
            F K +G+GN+ ++VD R+   P ++P  A  +      +  D ++   P  + GT+  +RI+N+DGSE   CGNG+RC AR +    + NG    T  T AGL+       DG   VDMGEP     D+P
Sbjct:    9 FAKMNGIGNEIVVVDLRDQPAP-VTPADARAVAAH---VPYDQLMLLQPARLPGTEAFVRIYNNDGSESGACGNGMRCVARQMFAGSDKNG---LTFETRAGLLNCWRGPADGLYTVDMGEPKFGWQDIP 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_RHOE4 (Diaminopimelate epimerase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADG--------------VIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG----LIVPENSDDGKVKVDMG 776
            + F K HG  NDF+++ + +     + P + + LCDR  G+GADG              V+ A+P GV   D+ M   NSDGS  EMCGNGVR FA ++ +   L  K  F V + AG    ++   ++  G V V MG
Sbjct:    4 MDFSKGHGTQNDFVVLPDLD-VRVDLEPARVSALCDRQRGLGADGILRVARAGALADAGVLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYL-KASGLESKDEFVVGSRAGARPVVVHGYDATHGDVTVAMG 140          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_LISMH (Diaminopimelate epimerase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 41/92 (44.57%), Postives = 51/92 (55.43%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAA----KLCDRNFGIG-ADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 674
            +HF K HG  NDF LVD   +     S EQ A    KLCDR   +G ADG+++       G    MR+ NSDGS   MCGNG+R  AR++ E
Sbjct:    4 IHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLE 95          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CLAMS (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.634e-12
Identity = 53/150 (35.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE--LENLNGKQSFTVHTGAGLIVPENSDDGKVKVDM-------GEPILKASDV 803
            L F K  G GNDF+L  +  + E  ++  Q   LCDR+FGIGADG I A+                  ++ M   N DGS  EMCGNG+R F  F+ E  L  L   ++  + T AG+   + S  G  +VD+       GEP+++A D+
Sbjct:    4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAALDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTVPIGTRAGVRDVQRSGSG-FQVDLGRWALAGGEPLVRAKDL 151          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_RHOPA2.978e-1235.38Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_MYCA12.978e-1235.71Diaminopimelate epimerase OS=Mycobacterium avium (... [more]
DAPF_CLAM32.978e-1234.90Diaminopimelate epimerase OS=Clavibacter michigane... [more]
DAPF_BUCAP2.978e-1230.94Diaminopimelate epimerase OS=Buchnera aphidicola s... [more]
DAPF_RICTY5.079e-1236.67Diaminopimelate epimerase OS=Rickettsia typhi GN=d... [more]
DAPF_METPB5.079e-1232.82Diaminopimelate epimerase OS=Methylobacterium popu... [more]
DAPF_RHOPT6.634e-1236.15Diaminopimelate epimerase OS=Rhodopseudomonas palu... [more]
DAPF_RHOE46.634e-1235.97Diaminopimelate epimerase OS=Rhodococcus erythropo... [more]
DAPF_LISMH6.634e-1244.57Diaminopimelate epimerase OS=Listeria monocytogene... [more]
DAPF_CLAMS6.634e-1235.33Diaminopimelate epimerase OS=Clavibacter michigane... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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