EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13348 contig Csv1_Contig13348:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_IDILO (Diaminopimelate epimerase OS=Idiomarina loihiensis GN=dapF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.006e-25
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            LHF K HGLGNDF++VDN       ++P+Q  +  DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFA+F+ + +NL+ K    V T AG +V     DG+V VDMGEP+ + + VP+K
Sbjct:    3 LHFSKMHGLGNDFMVVDNVTQNL-YVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFAKFV-KAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDMGEPLFEPAAVPFK 133          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_NITEC (Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91) GN=dapF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.232e-25
Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVD--NRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            L F K HGLGNDFI+++  N+ ++   + P    +L DR+FGIG D ++       G D+  RIFN+DG E E CGNG RCFARF+ +  NL  K +  V T  G+I P   ++G+V V+MG P  + +++P++
Sbjct:    3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGGDFRYRIFNADGGEVEQCGNGARCFARFVRDY-NLTDKNTIRVETARGIITPTIENNGEVSVNMGVPQFEPAEIPFQ 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BURCM (Diaminopimelate epimerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dapF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.232e-25
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLS 818
            L F K HG GNDF+++D  +   P ++  Q   L +R+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+++   L  K+S  V    GLI     D+G+V VDMG P+   + VP+ +S
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFAPAQVPFDVS 136          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_NITMU (Diaminopimelate epimerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.833e-25
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDFI++D  N  +  +SPEQ  +L DR+ G+G D ++         D+  RIFN+DG E E CGNG RCF R++ +   +  KQ   + T +G+++PE   DG+V V+MG P     ++P+
Sbjct:    3 LKFTKMHGLGNDFIVIDAVNQ-QISLSPEQLRRLADRHLGVGCDQILLIEKAEGDADFRYRIFNADGGEVEQCGNGARCFVRYVHD-HGMTDKQQVRIETLSGVVIPELEADGEVTVNMGVPKFDPVEIPF 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            +HF K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  KQ   V T  G I      DG V V+MG P+L+   +P+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKQKIRVSTSNGKITLRLERDGNVTVNMGIPVLEPGRIPF 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CHRVO (Diaminopimelate epimerase OS=Chromobacterium violaceum GN=dapF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSA 821
            L F K HGLGNDF+++D    T   ++PEQ   L +R  GIG D ++   P    G D+  RIFN+DG E E CGNG RCFA+F+ + + L GK    V T  G+I PE   DG  +VDMG P  + +D+P+   A
Sbjct:    3 LKFSKMHGLGNDFMVIDGVRQTVS-LTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRYRIFNNDGGEVEQCGNGARCFAKFVRD-QGLTGKSRIEVETARGVIAPEYLGDGLARVDMGVPRFRPADLPFLADA 136          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_IDILO4.006e-2545.86Diaminopimelate epimerase OS=Idiomarina loihiensis... [more]
DAPF_NITEC5.232e-2541.79Diaminopimelate epimerase OS=Nitrosomonas eutropha... [more]
DAPF_BURCM5.232e-2542.96Diaminopimelate epimerase OS=Burkholderia ambifari... [more]
DAPF_NITMU6.833e-2541.22Diaminopimelate epimerase OS=Nitrosospira multifor... [more]
DAPF_SHESH8.924e-2546.21Diaminopimelate epimerase OS=Shewanella sediminis ... [more]
DAPF_SHEB98.924e-2545.86Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB88.924e-2545.86Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB58.924e-2545.86Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB28.924e-2545.86Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_CHRVO8.924e-2544.12Diaminopimelate epimerase OS=Chromobacterium viola... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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