EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.166e-24
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSLIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.166e-24
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG PIL+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSLIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEWM (Diaminopimelate epimerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.522e-24
Identity = 60/132 (45.45%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            +HF K HGLGNDF++VD         SPEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T  G I      DG V V+MG P+L  S +P+
Sbjct:    2 IHFAKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKHKIKVSTSNGKITLRLERDGNVTVNMGVPVLDPSKIPF 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.522e-24
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +      DG V V+MG P+L+ S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLEPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.522e-24
Identity = 59/135 (43.70%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE---NSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++V+    + P      A ++CDR  G+GADG++  +P     D  MR+FN DGSEPEMCGN +RC A + A    L  K    V T AGLI PE   + D   V+VDMG P L+ +++P +
Sbjct:    1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRMRVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRVDMGRPRLERAEIPMR 133          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 61/133 (45.86%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +      DG V V+MG P+L  S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSE 851
            + F K HGLGNDF+++DN       +S +  ++L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+ +++ L  K+   V T  G I  +   DG + VDMG+PIL+ + VP++    +   + + E
Sbjct:    3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-KMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGKPILEPAKVPFEAQKEEKTYILRVE 146          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_SHESW1.166e-2446.62Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEPC1.166e-2446.62Diaminopimelate epimerase OS=Shewanella putrefacie... [more]
DAPF_SHEWM1.522e-2445.45Diaminopimelate epimerase OS=Shewanella woodyi (st... [more]
DAPF_SHEON1.522e-2445.11Diaminopimelate epimerase OS=Shewanella oneidensis... [more]
DAPF_DESAP1.522e-2443.70Diaminopimelate epimerase OS=Desulforudis audaxvia... [more]
DAPF_SHESA1.988e-2445.86Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_PSYIN1.988e-2441.10Diaminopimelate epimerase OS=Psychromonas ingraham... [more]
DAPF_ACIBY1.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBT1.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBS1.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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