EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBC (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ACICU) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB5 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB0057) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB3 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dapF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE   +G V+V+MG P    +++P+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +      DG V V+MG P+L  S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            + F K HGLGNDF++VD         SPEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +      DG V V+MG P+L  S +P+K
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYK 812
            +HF K HGLGNDF++VD         SPEQ  +L +RNFG+G D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +      DG V V+MG P+   S++P+K
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMGVPVTDPSNIPFK 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_METMP (Diaminopimelate epimerase OS=Methanococcus maripaludis GN=dapF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENS-DDGK---VKVDMGEPILKASDVP 806
            + F K HGLGND+I VD    ++   +P + +K + DR+FGIG+DG++  +P  +  D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T AG+ V E + ++GK   VKVDMGEPILKA ++P
Sbjct:    1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMGEPILKAEEIP 131          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLS 818
            + F K HG GNDF+++D  N +    +P Q   L DR FG+GAD ++    P   G D+  RI+N+DG E E CGNG R F +F+ + + L  KQ+  V T +G+I P    +G++ VDMG PIL   DVP+ +S
Sbjct:    3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTPEDVPFDVS 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDN-RNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            L F K HGLGNDF+++D  R S    +SPEQ   L DR+FG+G D ++        G D+  RIFN+DG E E CGNG RCF RF+ + E L  K+   V T  G+I P    DG V VDMG P    +++P+
Sbjct:    3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVETMRGIISPRLEGDGNVTVDMGIPRFLPAEIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU5 (Diaminopimelate epimerase OS=Pseudomonas stutzeri (strain A1501) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.391e-24
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D   S    I P+ A +  DR+ G+G D ++   P  N   D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T  G+I  +   DG+++VDMG P L  +++P++     +       L+VDG
Sbjct:    3 LRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVDMGPPRLVPAEIPFQ----AEREALSYSLEVDG 147          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_ACIBC1.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIB51.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIB31.988e-2445.45Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_SHESR2.597e-2445.11Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESM2.597e-2445.11Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEDO2.597e-2444.36Diaminopimelate epimerase OS=Shewanella denitrific... [more]
DAPF_METMP2.597e-2445.93Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_HERAR2.597e-2442.22Diaminopimelate epimerase OS=Herminiimonas arsenic... [more]
DAPF_DECAR2.597e-2445.11Diaminopimelate epimerase OS=Dechloromonas aromati... [more]
DAPF_PSEU53.391e-2441.06Diaminopimelate epimerase OS=Pseudomonas stutzeri ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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