EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSB (Diaminopimelate epimerase OS=Azoarcus sp. (strain BH72) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.391e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPY 809
            + F K HGLGNDF+++D    T   ++P +   + DR+FG+G D ++   P G +  D+  RIFN+DG E E CGNG RCF RF+ + + L  K+   V T AG+I P    DG V VDMG P L  + +P+
Sbjct:    3 IRFTKMHGLGNDFVVID-ATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRYRIFNADGGEVEQCGNGARCFVRFVHD-KGLTDKREIRVETRAGVIAPALRPDGLVSVDMGVPELSPARIPF 132          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.429e-24
Identity = 66/167 (39.52%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGT---DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL---IVPEN--------------SDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELD 857
            + F K HGLGNDFIL+ +      R  P+ A +LCDR FGIGADG++      N     DY MRI+NSDGSE EMCGN +RC A+++A+ E  +GK+   + T AG+    + EN              S +  VKV+M +P+LK+SD+P  +  +++    +  +D
Sbjct:    1 MKFEKMHGLGNDFILMKDFQ----RNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKR-LAIATTAGIKRVEIVENFDLMGEINLSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPID 162          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ACTSZ (Diaminopimelate epimerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dapF PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.784e-24
Identity = 63/139 (45.32%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAK-LCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANK 827
            +HF K HGLGNDF++VD    T+    PE+  K L DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T  G +V    DDG+++V+MGEPI + + +P+  +ANK
Sbjct:    1 MHFSKMHGLGNDFVVVDA--VTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGEPIWEPAKIPF--NANK 134          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 64/151 (42.38%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDG 866
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T  G+I  E   DG++ VDMG P L   ++P++ +           LDVDG
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVDMGPPRLVPEEIPFQAA----EQAKSYSLDVDG 147          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-----VPENSDDGKVKVDMGEPILKASDVP 806
            L F K  G+GND++ +D+  + + R++PEQ  K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +   L   ++  + TGAG++     +   +    V VDMG+P+L  S +P
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPVLVPSQIP 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-----VPENSDDGKVKVDMGEPILKASDVP 806
            L F K  G+GND++ +D+  + + R++PEQ  K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +   L   ++  + TGAG++     +   +    V VDMG+P+L  S +P
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPVLVPSQIP 135          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLS 818
            L F K HG GNDF+++D  +   P ++      L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K S  V    G+I     D+G+V VDMG P+ + + VP+  S
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDTS 136          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPR----ISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKD 830
            L F K HGLGNDF+++D    + P     +  ++  +L DR FG+G D ++   P     D+  RI N+DGSE   CGNG RCFARF+ E + L  K+S  V T AG +    +DD ++ VDMG P      +P    A  D
Sbjct:    3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVETAAGQMTLSVTDDDQITVDMGAPRWAPDAIPMTAKAEAD 143          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.867e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNV 881
            LHF K HGLGNDF+++D   +   R+  E+  +L DR+ GIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+ +   L  K+   V T AG +     DD +++VDMG P      VP+   A+         L+VDG  W++
Sbjct:    3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVETQAGPLTLRVEDDERIRVDMGVPRFAPEVVPFDAPADAPAHC----LEVDGETWDI 152          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.289e-23
Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRI-SPEQAAK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPENSDDGKVKVDMGEPILKASDVP 806
            + F K HGLGND+I VD   +T  +I +P + ++ + DR+FGIG+DG++  +P     D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T AG+    +  EN     VKVDMGEPILKA  +P
Sbjct:    1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVLILPS-EIADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTVENDKVVLVKVDMGEPILKAETIP 131          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_AZOSB3.391e-2442.42Diaminopimelate epimerase OS=Azoarcus sp. (strain ... [more]
DAPF_NATTJ4.429e-2439.52Diaminopimelate epimerase OS=Natranaerobius thermo... [more]
DAPF_ACTSZ5.784e-2445.32Diaminopimelate epimerase OS=Actinobacillus succin... [more]
DAPF_PSESM7.555e-2442.38Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_LEPIN7.555e-2442.22Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_LEPIC7.555e-2442.22Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_BURTA7.555e-2442.22Diaminopimelate epimerase OS=Burkholderia thailand... [more]
DAPF_ALCBS7.555e-2439.44Diaminopimelate epimerase OS=Alcanivorax borkumens... [more]
DAPF_CHRSD9.867e-2439.74Diaminopimelate epimerase OS=Chromohalobacter sale... [more]
DAPF_METM71.289e-2344.85Diaminopimelate epimerase OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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