EY756692

Overview
NameEY756692
Unique NameEY756692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 2.676e-57
Identity = 114/136 (83.82%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAPA+GGVKKPHR+RPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.676e-57
Identity = 114/136 (83.82%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 4.565e-57
Identity = 113/135 (83.70%), Postives = 118/135 (87.41%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 477
            MARTKQTARKSTGGKAPRKQLATKAARKSAPA+GGVKKPHRFRPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 7.786e-57
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.786e-57
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.328e-56
Identity = 113/136 (83.09%), Postives = 116/136 (85.29%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.735e-56
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 2.959e-56
Identity = 113/136 (83.09%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTAR STGGKAPRKQLA KAAR+SAPATGGVKKPHRFRPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 8.609e-56
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKS GGKAPR  LATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136          
BLAST of EY756692 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.124e-55
Identity = 115/136 (84.56%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   73 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 480
            MARTKQTARKSTGGKAPRKQLATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135          
The following BLAST results are available for this feature:
BLAST of EY756692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CAEEL2.676e-5783.82Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H33A_LILLO2.676e-5783.82Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_GRIJA4.565e-5783.70Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3_VOLCA7.786e-5785.29Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2[more]
H32_CHLRE7.786e-5785.29Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H3L_XENLA1.328e-5683.09Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H31_CHLRE1.735e-5684.56Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3L5_ARATH2.959e-5683.09Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H3L3_ARATH8.609e-5682.35Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H33_CHLRE1.124e-5584.56Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756692 ID=EY756692; Name=EY756692; organism=Citrus sinensis; type=EST; length=607bp
CCACGCGTCCGCTAAAATTTTGTTTCACTTTCTCAAGAAACAAACACTCA
TTTTCGTCTTCTACTCTCACAAATGGCCCGCACAAAGCAAACCGCTAGGA
AATCAACCGGAGGAAAGGCGCCACGCAAGCAGCTTGCAACAAAGGCGGCT
CGTAAGTCGGCTCCGGCGACGGGAGGAGTGAAGAAGCCTCACCGTTTCAG
GCCAGGAACCGTTGCTCTGAGAGAGATCAGGAAGTACCAGAAGAGCACTG
AGCTTTTGATCAGGAAGCTTCCGTTCCAAAGACTCGTTAGGGAAATCGCT
CAGGACTTTAAGACCGATCTGAGGTTCCAAAGCAGCGCCGTCGCGGCTCT
TCAAGAAGCTGCCGAGGCTTATCTAGTCGGTCTCTTTGAAGATACTAACC
TCTGCGCCATTCATGCCAAGAGAGTTACTATTATGCCCAAGGATATTCAG
CTCGCTAGGAGAATTAGAGGCGAGAGAGCTTAATTGAGTTCTTATGATTG
TAAATCTTTGGACTGTAATGTTGAATCTCGATTTTATTTGCTATCAATTG
AAATGGAAAAAAAATGTTGCTCTGCTTNAAAAANAAAAAAAAAAAAAAAA
AANNAAN
back to top