EY756676 | Citrus Genome Database

Overview


Name	EY756676
Unique Name	EY756676
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	400

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_ASPOR (Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_ASPNC (Histone H3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hht1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_ASPFU (Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_ASPCL (Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_AJECA (Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_PICST (Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_PICGU (Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_DEBHA (Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 209
            EI+QDFKTDLRFQSSAV ALQE AEAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:   74 EIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135

[Close]

BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.453e-23
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 3

Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 209
            EI+QDFK+DLRFQSSA+ ALQE  EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:   74 EIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135

The following BLAST results are available for this feature:

BLAST of EY756676 vs. ExPASy Swiss-Prot

BLAST of EY756676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184


Match Name	E-value	Identity	Description
H3_ASPOR	4.941e-23	82.54	Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3	[more]
H3_ASPNC	4.941e-23	82.54	Histone H3 OS=Aspergillus niger (strain CBS 513.88...	[more]
H3_ASPFU	4.941e-23	82.54	Histone H3 OS=Aspergillus fumigatus GN=hhtA PE=3 S...	[more]
H3_ASPCL	4.941e-23	82.54	Histone H3 OS=Aspergillus clavatus GN=hht1 PE=3 SV...	[more]
H3_AJECA	4.941e-23	82.54	Histone H3 OS=Ajellomyces capsulata GN=HHT1 PE=3 S...	[more]
H33_PICST	4.941e-23	82.54	Histone H3.3 OS=Pichia stipitis GN=HHT3 PE=3 SV=1	[more]
H33_PICGU	4.941e-23	82.54	Histone H3.3 OS=Pichia guilliermondii GN=HHT3 PE=3...	[more]
H33_DEBHA	4.941e-23	82.54	Histone H3.3 OS=Debaryomyces hansenii GN=HHT3 PE=3...	[more]
H32_USTMA	4.941e-23	87.10	Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3	[more]
H3_PHANO	6.453e-23	83.87	Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-011-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756676 ID=EY756676; Name=EY756676; organism=Citrus sinensis; type=EST; length=400bp
TTCGGAAGACCCACGCGTCCGGAGAAATCTCTCAAGATTTTAAGACCGAT
CTGAGGTTCCAGAGCAGCGCCGTTGCGGCTCTTCAAGAACCTGCTGAGGC
TTATCTTGTGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTA
AGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGA
GGAGAGAGAGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGC
TTTTAGCGTTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAAT
GTAATGGAAAGTTTGAATCTATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG