EY756676

Overview
NameEY756676
Unique NameEY756676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_DROHY (Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_DANRE (Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_CHICK (Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_BOVIN (Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.774e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK DLRFQSSAVAALQE +E+YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKADLRFQSSAVAALQEASESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3 
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of EY756676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
H33_DROHY4.774e-2690.48Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 S... [more]
H33_DANRE4.774e-2690.48Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3[more]
H33_CHICK4.774e-2690.48Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2[more]
H33_BOVIN4.774e-2690.48Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3[more]
H331_CAEEL4.774e-2690.48Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H32_LILLO4.774e-2692.06Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H3_STRDR6.236e-2692.06Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST6.236e-2692.06Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE6.236e-2692.06Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI6.236e-2692.06Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756676 ID=EY756676; Name=EY756676; organism=Citrus sinensis; type=EST; length=400bp
TTCGGAAGACCCACGCGTCCGGAGAAATCTCTCAAGATTTTAAGACCGAT
CTGAGGTTCCAGAGCAGCGCCGTTGCGGCTCTTCAAGAACCTGCTGAGGC
TTATCTTGTGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTA
AGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGA
GGAGAGAGAGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGC
TTTTAGCGTTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAAT
GTAATGGAAAGTTTGAATCTATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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