EY756676

Overview
NameEY756676
Unique NameEY756676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_PARLI (Histone H3, embryonic OS=Paracentrotus lividus PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_LYTPI (Histone H3, embryonic OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.236e-26
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QD+KTDLRFQS AV ALQE AEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   74 EIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.389e-25
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 209
            EI+QDFK+DLRFQSSAV ALQE AEAY+VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:   74 EIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQSSAV ALQE +EAYLVGLFEDTNLCAIHAKRV+IMPKDIQL RRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QD+KTDLRFQS AV ALQE AEAYLVG+FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   75 EIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
The following BLAST results are available for this feature:
BLAST of EY756676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
H3_PISOC6.236e-2692.06Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR6.236e-2692.06Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]
H3_PARLI6.236e-2692.06Histone H3, embryonic OS=Paracentrotus lividus PE=... [more]
H3_LYTPI6.236e-2692.06Histone H3, embryonic OS=Lytechinus pictus PE=2 SV... [more]
H3_DERIM6.236e-2692.06Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H3L3_ARATH1.064e-2590.48Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H332_CAEEL1.064e-2588.89Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H3_GRIJA1.389e-2591.94Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H3L_CAIMO1.814e-2590.48Histone H3-like OS=Cairina moschata PE=3 SV=2[more]
H33B_LILLO1.814e-2590.48Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756676 ID=EY756676; Name=EY756676; organism=Citrus sinensis; type=EST; length=400bp
TTCGGAAGACCCACGCGTCCGGAGAAATCTCTCAAGATTTTAAGACCGAT
CTGAGGTTCCAGAGCAGCGCCGTTGCGGCTCTTCAAGAACCTGCTGAGGC
TTATCTTGTGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTA
AGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGA
GGAGAGAGAGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGC
TTTTAGCGTTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAAT
GTAATGGAAAGTTTGAATCTATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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