EY756676

Overview
NameEY756676
Unique NameEY756676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQSSAV ALQE  E+YLVGLFEDTNLC IHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS AV ALQE AEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:   74 EIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 55/63 (87.30%), Postives = 61/63 (96.83%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   74 EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQS AV ALQE AEAYLVGLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:   73 EIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QD+K DLRFQS AV ALQE AEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.042e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKTDLRFQ SAV ALQE +EAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.279e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFKT+LRFQSSAV ALQE +EAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   74 EIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.894e-25
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDF TDLRFQS+AV ALQE +EAYLVGL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   73 EIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+QDFK DLRFQS AV ALQE AEAYLVGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:   75 EIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137          
BLAST of EY756676 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 3
Query:   24 EISQDFKTDLRFQSSAVAALQEPAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
            EI+Q+FKTDLRFQS+A+ ALQE +EAYLVGLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+
Sbjct:   77 EIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139          
The following BLAST results are available for this feature:
BLAST of EY756676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
H31T_HUMAN1.814e-2590.48Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3L1_ARATH2.370e-2590.48Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H33L2_CAEEL2.370e-2587.30Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H33_CHLRE3.095e-2592.06Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H33A_LILLO3.095e-2590.48Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3L_XENLA4.042e-2590.48Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H3_STRPU5.279e-2590.48Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H3L_HUMAN6.894e-2588.89Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H3L2_ARATH1.176e-2490.48Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H33A_DICDI1.176e-2485.71Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756676 ID=EY756676; Name=EY756676; organism=Citrus sinensis; type=EST; length=400bp
TTCGGAAGACCCACGCGTCCGGAGAAATCTCTCAAGATTTTAAGACCGAT
CTGAGGTTCCAGAGCAGCGCCGTTGCGGCTCTTCAAGAACCTGCTGAGGC
TTATCTTGTGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTA
AGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGA
GGAGAGAGAGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGC
TTTTAGCGTTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAAT
GTAATGGAAAGTTTGAATCTATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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