EY756675

Overview
NameEY756675
Unique NameEY756675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.593e-55
Identity = 107/125 (85.60%), Postives = 119/125 (95.20%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 421
            MARTKQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDL 125          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.694e-54
Identity = 104/125 (83.20%), Postives = 117/125 (93.60%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 421
            MARTKQTARKST  KAPRKQLA KAARKSAP +GG+KKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+
Sbjct:    1 MARTKQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDL 125          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.798e-52
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 421
            MARTKQTARKSTG K PRK + +K A K  P   ++GGVKK HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDI
Sbjct:    1 MARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 128          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.266e-52
Identity = 102/126 (80.95%), Postives = 115/126 (91.27%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            MARTKQTARKSTG K PRK L  K+++KS P+T G+KK HR+RPGTVALREIR+YQKS+ELLI+KLPFQRLVREIAQ+FKTDLRFQ+ A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIM KDIQ
Sbjct:    1 MARTKQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQ 126          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.069e-51
Identity = 108/130 (83.08%), Postives = 115/130 (88.46%), Query Frame = 2
Query:   47 MARTKQT--ARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 421
            MARTK T  ARK TGGKAPRKQ+ +KAARKSA    T+GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDI
Sbjct:    1 MARTKSTVIARKVTGGKAPRKQIGSKAARKSAAPSNTSGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDI 130          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.865e-50
Identity = 105/126 (83.33%), Postives = 112/126 (88.89%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            MA TKQTARKST GKAPRKQLATKAA KSAP+TGGVKK HRYRP TVAL EIR+Y  STELLI KLPFQRLV+EIAQDFKTDLRFQS A+ ALQEA+EA  VGLFEDTNLCAIHAK VT++PKDIQ
Sbjct:    1 MAHTKQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQ 125          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.468e-49
Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            MARTKQTARKSTG K PRK L++K++  S P    +KK HR+RPGTVALREIR+YQKS++LLI+KLPFQRLVREIAQ+FKTDLRFQ+ A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTIM KDIQ
Sbjct:    1 MARTKQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQ 126          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.464e-48
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 2
Query:   80 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 412
            TG KAPRK LA KAARK+AP  GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIA D+K+DLRFQS AV A+QEAAEAY+VGLFEDTNLCAIHA RVTIMP
Sbjct:    2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.464e-48
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 2
Query:   83 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            GGKAPRKQLATKAARK+A   G VKKPHR+RPGTVALREIR+YQKST+LL+RKLPFQRLVREIAQD K DLRFQS A+ ALQEA+E +LVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQ 117          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.169e-48
Identity = 97/114 (85.09%), Postives = 107/114 (93.86%), Query Frame = 2
Query:   77 STGGKAPRKQLATKAARKSAPT--TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 412
            +TG KAPR+QLA KAARK+A    +GGVKKPHR+RPGTVALREIRK+QKSTELLIRKLPFQRLVREIAQ++K+DLRFQS AVLALQEAAEAY+VGLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
The following BLAST results are available for this feature:
BLAST of EY756675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_TETTH1.593e-5585.60Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H34_TETTH6.694e-5483.20Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33A_DICDI4.798e-5282.03Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H33B_DICDI6.266e-5280.95Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H3_YARLI1.069e-5183.08Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=... [more]
H3L_MOUSE5.865e-5083.33Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H33C_DICDI8.468e-4977.78Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H34_STYLE2.464e-4886.49Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33L3_CAEEL2.464e-4884.21Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H31_STYLE7.169e-4885.09Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756675 ID=EY756675; Name=EY756675; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGAGAAATTGAGTAGAGGAGTTGAAGAAACTCAGAGATGG
CCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGG
AAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGG
TGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAA
TTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTC
CAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTT
CCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTG
TTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTC
ACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCG
TGCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACTGGAAGGGAAG
GGGGCAGTTGTAATGTGTTAATTTGTACGTGGGGTTGGTGGGGGTANAAA
AAANAGGNAATAGATTTCCANAANTTATAAATTATGGTTTTTGTCTCATC
TGAGTTTGTTTTGGGGGGGGTTTATAATGCTATTTGTGATGATGGGGATT
TTATTCCCATAAGGACTGGCTTTATGGGGTCTTTGGAATCTNGTGCCACG
TAGTGGGGTGTTGAACTCTCTATTATTTTGCTCTAATCTAGTTTAGTTTT
TATTAAAAAAAAAAAAAAAAAAAAAAAGGCGGCGCTTTAAGGATCCAGCT
ACGTACGGTGCATGCGACTCATACTTCTCTATGGGCCCCTAATTCATTCC
CTGGCGCCGTTTTAC
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