EY756675

Overview
NameEY756675
Unique NameEY756675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.322e-22
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            +  RYRPG  ALREIR+YQ ST LL+R+ PF R+VREI   F    D R+Q+ A+LALQEAAEA+LV L ED  LC++HA+RVT+ PKD+Q
Sbjct:   28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQ 118          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  152 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            V K  RYRPG  AL EIRKYQK+ +LLI+K PF RLVREI Q    F  D R +S A+ ALQEAAEA+LV +FE ++L + HAKRVT+M  DIQ
Sbjct:  185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQ 278          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.353e-21
Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   95 PRKQLATKAARKSAPTTGGVKKPHRYRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            PR++  T   R S+P  G  ++  R  PG     + L+EI+K Q+ST+LL+RKLPF R+VREI   F    DL +Q+ A+LALQEAAEA+LV LFED  L  +HA RVTI PKDIQ
Sbjct:    3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQ 116          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:   56 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            T+QT   ++     R+    K +R++ P  G  KK +RYRPGTVAL+EIR +QK T LLI    F R VR I          R+ + A++ALQEAAE YLVGLF D+ LCAIHA+RVT+M KD +
Sbjct:   45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFE 166          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.470e-21
Identity = 63/125 (50.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:   71 RKSTGGKAPRKQ----LATKAARKSAPTTGGVKKPH-RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            R+S   +APR++      T    +  P+ G     H R R G   L+EIRK QKST LLIRKLPF RL REI   F    D  +Q+ A+LALQEAAEA+LV LFED  L  +HA RVT+ PKD+Q
Sbjct:    5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.079e-19
Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 2
Query:   53 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            R  +T R+     AP       AA +  P+ G   +P   R  TV L+EIR  QK+T LL+RK PF RL REI   F    D  +Q+ A+LALQEAAEA+LV LFED  L ++HA RVT+ PKD+Q
Sbjct:    8 RKPETPRRRPASPAP-------AAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQ 125          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.409e-19
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  152 VKKPH--RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA--QDFKT-DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            V K H  ++RPG  AL EIRKYQKST++LI+K PF RLV EI   Q +K+ D R ++ A++ALQEAAEA++V +FE + L   HAKRVT+MP DIQ
Sbjct:  239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQ 334          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.840e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  152 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            + K  RYRPG  AL EIRKYQ+S +LLI K PF RLVREI Q    F +DLR +S A+ ALQEA+EA LV +F+ ++L + H+KR T+   D+Q
Sbjct:  158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQ 251          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.139e-19
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 2
Query:   98 RKQLATKAARKSAPT---TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 421
            R + +TK  R+S+     +   K   R+RPG  AL+++R+Y ++  LLIRKLPFQRL+REI+     +  LR+ S A++ LQ   E Y+V  FED N CA+HAKRVT+M KD+
Sbjct:   54 RNKASTKKKRESSGEKYESARDKVIRRFRPGDNALKQLRQYNQTPSLLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDL 166          
BLAST of EY756675 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.558e-18
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   95 PRKQLATKAARKSAPTTGGVKKPH-------RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 424
            PR++  T   R S+P  G  ++         R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +Q+ A+LALQEAAEA+L+ LFED  L ++HA RVT+ PKDIQ
Sbjct:    3 PRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQ 121          
The following BLAST results are available for this feature:
BLAST of EY756675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
CENPA_CHICK2.322e-2260.44Histone H3-like centromeric protein A OS=Gallus ga... [more]
HCP3_CAEEL6.757e-2260.64Histone H3-like centromeric protein hcp-3 OS=Caeno... [more]
CENPA_CRIGR3.353e-2152.59Histone H3-like centromeric protein A OS=Cricetulu... [more]
HTR12_ARATH7.470e-2148.80Histone H3-like centromeric protein HTR12 OS=Arabi... [more]
CENPA_HUMAN7.470e-2150.40Histone H3-like centromeric protein A OS=Homo sapi... [more]
CENPA_BOVIN1.079e-1947.62Histone H3-like centromeric protein A OS=Bos tauru... [more]
HCP3L_CAEBR1.409e-1957.29Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
HCP3L_CAEEL1.840e-1954.26Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
CENPA_TETTH3.139e-1946.02Histone H3-like centromeric protein CNA1 OS=Tetrah... [more]
CENPA_MOUSE1.558e-1846.22Histone H3-like centromeric protein A OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-D06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756675 ID=EY756675; Name=EY756675; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGAGAAATTGAGTAGAGGAGTTGAAGAAACTCAGAGATGG
CCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGG
AAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGG
TGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAA
TTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTC
CAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTT
CCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTG
TTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTC
ACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCG
TGCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACTGGAAGGGAAG
GGGGCAGTTGTAATGTGTTAATTTGTACGTGGGGTTGGTGGGGGTANAAA
AAANAGGNAATAGATTTCCANAANTTATAAATTATGGTTTTTGTCTCATC
TGAGTTTGTTTTGGGGGGGGTTTATAATGCTATTTGTGATGATGGGGATT
TTATTCCCATAAGGACTGGCTTTATGGGGTCTTTGGAATCTNGTGCCACG
TAGTGGGGTGTTGAACTCTCTATTATTTTGCTCTAATCTAGTTTAGTTTT
TATTAAAAAAAAAAAAAAAAAAAAAAAGGCGGCGCTTTAAGGATCCAGCT
ACGTACGGTGCATGCGACTCATACTTCTCTATGGGCCCCTAATTCATTCC
CTGGCGCCGTTTTAC
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