EY756654

Overview
NameEY756654
Unique NameEY756654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756654_ssr627 microsatellite EY756654_ssr627:627..644. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.974e-48
Identity = 89/158 (56.33%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ YK+V C R GG+RFTING +YF LVLI+NV G G++  V IKGS++  W+ MSRN G N+Q NTYLNGQSLSFKV  SDG  + + N  P++W FG++
Sbjct:   91 PQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQS 248          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.744e-48
Identity = 87/165 (52.73%), Postives = 111/165 (67.27%), Query Frame = 2
Query:   32 DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSGAQ 517
            DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA++RVPC RRGG+RFT+ G  YF LVL+TNV  AG V ++ ++GSR   GW  MSRN G NWQ   YL+GQ LSF+VT +DG+T       P SW FG+T +  Q
Sbjct:   96 DPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFASTQ 260          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.744e-48
Identity = 86/158 (54.43%), Postives = 108/158 (68.35%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            P+WC PG T+ VTATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RN G NW   +YL GQ LSF+VT  DG+T    N  P+ W FG+T
Sbjct:  113 PQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQT 270          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 7.502e-48
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSGAQF 520
            E++CV+D +WC+PGT I++TATNFC          GG CNPP +HF L    F+ IA ++AG +PV Y+R+ C + G +RFT++G   F  VLITNV G+GD+ AV IKGSRTGW PM RN GQNW  N  L  Q+LSF+VT+SD  T TSYN +P +W++G+T  G QF
Sbjct:   94 ELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.798e-48
Identity = 92/170 (54.12%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSGAQF 520
            E+KCV+D K+CLPGT I+VTATNFC          GG CNPP  HF L    F+ IA ++AGV+P+ Y+RV C R GG+RF + G S+F  VLI+NVGGAGDV +V IKG+ +GW  M RN GQ W  N+   GQ LSF++T+SDG+T T+YN  P  W FG+T +G QF
Sbjct:   86 EVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.183e-47
Identity = 87/166 (52.41%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT-DSGAQFR 523
            P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RN G NW   +YL GQ+LSF+VT  DG+T    N  P+ W FG+T  S  QF+
Sbjct:   97 PQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSKLQFK 262          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.723e-47
Identity = 87/156 (55.77%), Postives = 107/156 (68.59%), Query Frame = 2
Query:   38 KWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            +WC  GT + VTATN+C          GGWCNPP++HFD+SQP ++ IA Y +G+VPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T W  MSRN G+NWQ N YL GQ+LSF+V   DG   T+Y+ APA+W FG T
Sbjct:   90 RWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGST 245          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.863e-47
Identity = 87/166 (52.41%), Postives = 114/166 (68.67%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            E+KCV+ P  C  G   ++VTATN C          GGWCNPP++HFDLS P F  IAQ +AG+VP++Y+RVPC + GGIR+TI G+ YFNLV+++NVGGAGDV  +S+KG+ R  W P+ RN GQ WQ +  L G+SL+F+V T D R  TS++  P  W FG T
Sbjct:   96 EVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVT 261          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.863e-47
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ + GS  T W PM RN G NW   +YL GQ LSF+VT  DG+T    N  P+ W FG+T
Sbjct:  115 PQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQT 272          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.848e-46
Identity = 85/162 (52.47%), Postives = 114/162 (70.37%), Query Frame = 2
Query:   35 PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSGAQ 517
            P+WC  GT + +TATN C          GGWCNPP+ HFD+SQP ++ I  YRAG+VPV Y++V C R+GG+RFT++G +YF LVLITNV G+G V A+S+KGS+TGW P++RN G NWQ N+ L GQ+LSF+VT++ G+T    +  P  W FG T +  Q
Sbjct:   90 PEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQ 251          
The following BLAST results are available for this feature:
BLAST of EY756654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXP17_ARATH1.974e-4856.33Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ5.744e-4852.73Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ5.744e-4854.43Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH7.502e-4852.94Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ9.798e-4854.12Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.183e-4752.41Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ3.723e-4755.77Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ4.863e-4752.41Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ4.863e-4753.16Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.848e-4652.47Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756654 ID=EY756654; Name=EY756654; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGC
CCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCGAACAACGCC
CTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGA
TCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTG
TCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGG
TTCACAATCAATGGGCATTCCTACTTCAACCTAGTGTTGATCACCAACGT
TGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAACTG
GCTGGCAGCCCATGTCAAGAAACTGAGGCCAAAACTGGCAAAGGAACACT
TATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGCCG
CACTGAGACTTCCTACAATGATGCCCCTGCTAGCTGGTCCTTTGGCCGAA
CTGACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGATTG
GGTGTTAACACCTATTGTAGCTAAATATTCCTGCACTAAGTAGTATATTT
TAGTAGTGAATGGTACCATACTAAGGTATATATATATATATATAATATAG
AAGTAGCTATGTGGCTAGTTTTTGGCTTCAGGGTCAAAAATGAAAAGAGG
CGCTTATTCTAAATGGCGTATTTTTTTCATTTTGATTGATTTTTATGCTG
CGTGGAGTGTCTAATATGGGATCCTCTATTATCTTGGGGATCATCTGTTA
CTTCCTTTTGGGGGTTCTGGTGAAGGCACNAATGCTGAGGGGAAATTTTC
AGCCGCATTGTGTTGAAAACAGCTCCCTTTTTGATGCTCTG
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