EY756654

Overview
NameEY756654
Unique NameEY756654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756654_ssr627 microsatellite EY756654_ssr627:627..644. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.801e-41
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 2
Query:   32 DPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDS--GAQF 520
            DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV Y+RV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RN G NWQ +  L GQ LSFKVT +D +T+T  N  P+SW FG+T S  G QF
Sbjct:   89 DPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.979e-40
Identity = 82/166 (49.40%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGR-TETSYNDAPASWSFGRT 502
            ++KCV+ P  C  G+   +VTATN C          GGWCNPP+ HFDL++P F  IA ++AG++PV+Y+RV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS N G ++Q  + L GQSLSF++T+   R T  +YN APASWS G+T
Sbjct:   85 QLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKT 249          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.585e-40
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDS 508
            P WC  G  I VT TN+C          GGWCN  + HFD+SQP +++I  Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RN G NWQ    L GQ+LSF VT++ G+T    +  PA WSFG+T S
Sbjct:   86 PDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 9.821e-40
Identity = 82/166 (49.40%), Postives = 105/166 (63.25%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSG 511
            EI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV Y+RVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR  GQNW  N  L GQS+S +VTTSDG T+   +  PASW FG+T  G
Sbjct:  100 EIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.283e-39
Identity = 82/162 (50.62%), Postives = 106/162 (65.43%), Query Frame = 2
Query:   35 PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDSGAQ 517
            P  C  GT I VT TNFC          GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS TGW  MSRN G NWQ    L GQ+LSF VT++ G+T    +  PA WSFG+T S  Q
Sbjct:   86 PSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.201e-37
Identity = 77/159 (48.43%), Postives = 104/159 (65.41%), Query Frame = 2
Query:   35 PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRTDS 508
            P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RN G NWQ    L GQ+LSF VT++ G+T    +  PA WSFG+T S
Sbjct:   86 PDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.119e-34
Identity = 79/169 (46.75%), Postives = 103/169 (60.95%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTT-SDGRTETSYNDAPASWSFGRT 502
            +++CV     C  G+  I VTATN C          GG  WCNPP+ HFDLS+P F  +A +RAG+VPV Y+RVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS N G ++Q    L GQ+LSFKVT+ + G+T  +    PASW FG T
Sbjct:   91 QMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLT 258          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.167e-30
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRN*GQNWQRNTYL-NGQSLSFKVTTSDGRTET-SYNDAPASW 487
            E++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV Y+RVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + N G  +Q    L N   L+ K+TT     +T   +DA + W
Sbjct:  108 ELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPW 270          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.738e-28
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   56 TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRN*GQNWQRNTYLNGQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            T++VTATN                    +HFDL+ P F  IA+ + GVVPV+Y++V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+ GQ W+    L G+SL+F+V T D R  TS+  AP  W++  T
Sbjct:  143 TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNT 283          
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2
Query:   14 EIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI-----KGSRTGWQPMSRN*GQNWQRNTYLNGQS-----LSFKVTTSDGRTETSYNDAPASWSFGRT 502
            ++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++ G  W+ N+   G +     +S ++T+  GRT  + N  PA W  G T
Sbjct:   93 QVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGT 262          
The following BLAST results are available for this feature:
BLAST of EY756654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXP12_ARATH6.801e-4151.79Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP18_ARATH1.979e-4049.40Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP19_ORYSJ2.585e-4049.69Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH9.821e-4049.40Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP18_ORYSJ1.283e-3950.62Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.201e-3748.43Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ2.119e-3446.75Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ3.167e-3042.68Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.738e-2842.00Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ4.300e-1129.51Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756654 ID=EY756654; Name=EY756654; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGC
CCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCGAACAACGCC
CTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGA
TCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTG
TCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGG
TTCACAATCAATGGGCATTCCTACTTCAACCTAGTGTTGATCACCAACGT
TGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAACTG
GCTGGCAGCCCATGTCAAGAAACTGAGGCCAAAACTGGCAAAGGAACACT
TATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGCCG
CACTGAGACTTCCTACAATGATGCCCCTGCTAGCTGGTCCTTTGGCCGAA
CTGACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGATTG
GGTGTTAACACCTATTGTAGCTAAATATTCCTGCACTAAGTAGTATATTT
TAGTAGTGAATGGTACCATACTAAGGTATATATATATATATATAATATAG
AAGTAGCTATGTGGCTAGTTTTTGGCTTCAGGGTCAAAAATGAAAAGAGG
CGCTTATTCTAAATGGCGTATTTTTTTCATTTTGATTGATTTTTATGCTG
CGTGGAGTGTCTAATATGGGATCCTCTATTATCTTGGGGATCATCTGTTA
CTTCCTTTTGGGGGTTCTGGTGAAGGCACNAATGCTGAGGGGAAATTTTC
AGCCGCATTGTGTTGAAAACAGCTCCCTTTTTGATGCTCTG
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