EY756654

Overview
NameEY756654
Unique NameEY756654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756654_ssr627 microsatellite EY756654_ssr627:627..644. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756654 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 50/177 (28.25%), Postives = 78/177 (44.07%), Query Frame = 2 
Query:   14 EIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-------RAGVVPVAYKRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSR--TGWQPMSRN*GQNWQRNTYLN---GQSLSFKVTTSDGRTETSYNDAPASWSFGRT 502
            +IKC  + + C    + V  T+ C          GG C     HFD+S   F  +A          AGV+ + YKRVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R   GW+ M ++ G  W+ N+          S ++T+  G+   + N  P+ W  G T
Sbjct:  100 QIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLT 266
The following BLAST results are available for this feature:
BLAST of EY756654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXPB5_ORYSJ7.334e-1128.25Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756654 ID=EY756654; Name=EY756654; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGC
CCGGCACCATTATGGTCACAGCTACCAATTTTTGCCCACCGAACAACGCC
CTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGA
TCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTG
TCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCAGG
TTCACAATCAATGGGCATTCCTACTTCAACCTAGTGTTGATCACCAACGT
TGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAACTG
GCTGGCAGCCCATGTCAAGAAACTGAGGCCAAAACTGGCAAAGGAACACT
TATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGCCG
CACTGAGACTTCCTACAATGATGCCCCTGCTAGCTGGTCCTTTGGCCGAA
CTGACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGATTG
GGTGTTAACACCTATTGTAGCTAAATATTCCTGCACTAAGTAGTATATTT
TAGTAGTGAATGGTACCATACTAAGGTATATATATATATATATAATATAG
AAGTAGCTATGTGGCTAGTTTTTGGCTTCAGGGTCAAAAATGAAAAGAGG
CGCTTATTCTAAATGGCGTATTTTTTTCATTTTGATTGATTTTTATGCTG
CGTGGAGTGTCTAATATGGGATCCTCTATTATCTTGGGGATCATCTGTTA
CTTCCTTTTGGGGGTTCTGGTGAAGGCACNAATGCTGAGGGGAAATTTTC
AGCCGCATTGTGTTGAAAACAGCTCCCTTTTTGATGCTCTG
back to top