EY756643

Overview
NameEY756643
Unique NameEY756643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 52/130 (40.00%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   16 VREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E++ L   + NP ++ IP W +NR+ DY+ G+   ++ + L+M LR+DL R++K R+++G RH  GL VRGQ
Sbjct:    1 MEEEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 53/130 (40.77%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   16 VREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + +DF+H++R+   +VDG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++  +  ++ NP++F IP+W LNR++DY+ G+   ++ + LDM LRDDL R+KK R+++G RH  GL VRGQ
Sbjct:    1 MEDDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 459
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ GK   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ              SKK+
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 52/127 (40.94%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ G+   +++  LDM +R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 54/128 (42.19%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G L+ AE++ +   +ANP    IP W LNR+KDY+ GK   +V   L   ++ D+ER K+IR+ RG+RH  GL+VRGQ
Sbjct:    5 QQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 53/130 (40.77%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ++ + I+R+ + ++DG +K+ +ALT IKGIG R+A  +C++  +D  K+ GELS  E++ +   +   +  +  IP W  NRQKDY+ G+   +V   L+M ++ D++RLKKIR +RG+RH  GL VRGQ
Sbjct:    4 DEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 459
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+  +  +++NP  + IP W LNR+KDY  GK   ++   L   ++ D+ER KKI++ RG+RH  GL+VRGQ               KKR
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            E+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   +++ L   +       IP W  N ++D   GK   +VSN LD+++ DD+  +KK+R+++G+RH  GL+VRGQ
Sbjct:    9 ENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ GK   +++  L M  R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130          
The following BLAST results are available for this feature:
BLAST of EY756643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METTH3.221e-2640.0030S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METS34.207e-2640.7730S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS13_PYRHO6.075e-2538.6230S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_PYRFU3.015e-2441.7330S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB3.938e-2440.9430S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_HYPBU6.717e-2442.1930S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_METKA1.146e-2340.7730S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_STAMF3.334e-2335.8630S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS13_PICTO3.334e-2339.0630S ribosomal protein S13P OS=Picrophilus torridus... [more]
RS13_PYRKO4.354e-2341.4130S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756643 ID=EY756643; Name=EY756643; organism=Citrus sinensis; type=EST; length=703bp
TTCGTCGACCCACGCGTCCGCGAAGATTTTCAGCACATTTTGCGTGTGCT
GAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAA
TTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGAT
GTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAA
TCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGT
TCTTGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTA
TCCAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGTCTGAAGAA
GATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTG
GACAACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCC
AAGAAGCGTTGAGCTGTCCGTTATCAATGTTTTGAACAATCTATACACAT
GTTCAGGAAGAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGACAAT
ATTAGATTTATTTTCTTTTCTTTGGATGGGGTTTAAGCATTTTGACTGTC
TGGCTTTTATCTATTATTTTCTCTATGGGAATATTTTTATTCAGATGTTT
TGCAACATATATTTCATCTCCCCTCTTTTATCTCAAAAAAAAAAAAAAAA
AAA
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