EY756643

Overview
NameEY756643
Unique NameEY756643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:104..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 51/127 (40.16%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG L+  E+  +  V+A+P +F IP W  NR+KDY  G+   V+ + L +  ++D+ RLK+IR +RG+RH  GL  RGQ
Sbjct:    5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER KK +  R  R   GL+VRGQ
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   25 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ +KK R+++G+RH  GLRVRGQ
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 49/133 (36.84%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    7 DPRVREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + + +++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LNR++D   G+   +    L M +++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   62 EEKPKDEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 51/128 (39.84%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER KK R+ RG+RH  GL+VRGQ
Sbjct:    3 QQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 45/133 (33.83%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    7 DPRVREDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            + +  +DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L+ L   V   +++ +P+W LN +++   GK   +VS  L++++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   21 EKKENKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 47/128 (36.72%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            +DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E++ L   V N +++ +PDW LN +++   GK   +V+  LD+++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   26 KDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 48/129 (37.21%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   19 REDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ++ F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++  +   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER KKI++ RG+RH  GL+VRGQ
Sbjct:    4 QQQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 50/129 (38.76%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   19 REDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ++ F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++  +  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER ++ R+ RG+RH  GL+VRGQ
Sbjct:    3 QQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131          
BLAST of EY756643 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   22 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 405
            ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R+KKI  +RG+RH  G +VRGQ
Sbjct:   13 EDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139          
The following BLAST results are available for this feature:
BLAST of EY756643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METJA5.686e-2340.1630S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS18_ENCCU7.427e-2341.7340S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_METTP1.654e-2242.5230S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_UNCMA6.287e-2236.8430S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_SULSO6.287e-2239.8430S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_THEAC1.072e-2133.8330S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_THEVO1.401e-2136.7230S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_SULTO2.389e-2137.2130S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_SULAC3.120e-2138.7630S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_NATPD3.120e-2139.0630S ribosomal protein S13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756643 ID=EY756643; Name=EY756643; organism=Citrus sinensis; type=EST; length=703bp
TTCGTCGACCCACGCGTCCGCGAAGATTTTCAGCACATTTTGCGTGTGCT
GAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAA
TTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGAT
GTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAA
TCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGT
TCTTGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTA
TCCAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGTCTGAAGAA
GATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTG
GACAACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCC
AAGAAGCGTTGAGCTGTCCGTTATCAATGTTTTGAACAATCTATACACAT
GTTCAGGAAGAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGACAAT
ATTAGATTTATTTTCTTTTCTTTGGATGGGGTTTAAGCATTTTGACTGTC
TGGCTTTTATCTATTATTTTCTCTATGGGAATATTTTTATTCAGATGTTT
TGCAACATATATTTCATCTCCCCTCTTTTATCTCAAAAAAAAAAAAAAAA
AAA
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